RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TMEM14BQ9NUH8 114 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 FKBP11Q9NYL4 201 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 RBMY1BA6NDE4 496 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 RBMY1EA6NEQ0 496 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 IGKV1-39P01597 117 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 IGKV1D-39P04432 117 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 RBMY1DP0C7P1 496 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 PI3P19957 117 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 RNASE10Q5GAN6 216 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 LINC00322Q6ZN03 302 aaPredicted RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 SLC16A13Q7RTY0 426 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 OR52B4Q8NGK2 314 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 OR5B3Q8NH48 314 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 OR4A16Q8NH70 328 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 SEC22AQ96IW7 307 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 MRPS26Q9BYN8 205 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 ZNF436Q9C0F3 470 aaPredicted RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 FAM212BQ9NTI7 297 aaPredicted RBP11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 C21orf62Q9NYP8 219 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 UFC1Q9Y3C8 167 aa11.8□□□□□ -0.52
CCDC88B-205ENST00000472524 LYSTQ99698 3801 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 DNAH1Q9P2D7 4330 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 CD3DP04234 171 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 Q56UQ5 140 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 GPR141Q7Z602 305 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 SCARB1Q8WTV0 552 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 TMEM190Q8WZ59 177 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 MARC2Q969Z3 335 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 BSCL2Q96G97 398 aaPredicted RBP11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 HIPK2Q9H2X6 1198 aa11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 MRPL27Q9P0M9 148 aaKnown RBP11.79□□□□□ -0.52
CCDC88B-205ENST00000472524 K7EIM0 57 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 C8orf88P0DMB2 117 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 PPP5CP53041 499 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 ELLP55199 621 aaPredicted RBP11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 RBPMS2Q6ZRY4 209 aaKnown RBP11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 OR1L6Q8NGR2 347 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 MISP3Q96FF7 219 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 ABHD1Q96SE0 405 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 CHRDL1Q9BU40 450 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 C20orf24Q9BUV8 137 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 MTFP1Q9UDX5 166 aa11.78□□□□□ -0.52
CCDC88B-205ENST00000472524 IGHV3OR16-8A0A075B7F1 116 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 F8W735 103 aaPredicted RBP11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 RGS5O15539 181 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 ZNF207O43670 478 aaKnown RBP11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 PIGPP57054 158 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 RND3P61587 244 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 IZUMO4Q1ZYL8 232 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 ANKRD55Q3KP44 614 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 SPINK9Q5DT21 86 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 SPSB3Q6PJ21 355 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 LHFPL1Q86WI0 220 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 ARRDC1Q8N5I2 433 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 OR4D10Q8NGI6 311 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 OR1P1Q8NH06 330 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 MIXL1Q9H2W2 232 aa11.77□□□□□ -0.53
CCDC88B-205ENST00000472524 TRAV25A0A0B4J276 109 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 NDUFA4O00483 81 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 TBPP20226 339 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 ADMP35318 185 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 ALDH3B2P48448 385 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 PRCDQ00LT1 54 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 SPCS2Q15005 226 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 SCGB2B2Q4G0G5 96 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 OR2C3Q8N628 320 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 ZNF486Q96H40 463 aaPredicted RBP11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 TP53RKQ96S44 253 aa11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 DAZ1Q9NQZ3 744 aaKnown RBP11.76□□□□□ -0.53
CCDC88B-205ENST00000472524 RAB3DO95716 219 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 IGHV3-48P01763 117 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 AKR1C2P52895 323 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 TAS2R19P59542 299 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 HSPE1P61604 102 aaKnown RBP11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 TMEM229BQ8NBD8 167 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 C15orf40Q8WUR7 153 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 PINX1Q96BK5 328 aaKnown RBP11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 ATP6V0BQ99437 205 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 COPZ2Q9P299 210 aa11.75□□□□□ -0.53
CCDC88B-205ENST00000472524 C3orf85A0A1B0GTC6 90 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 GABARAPH6UMI1 98 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 CTDSP2O14595 271 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 MT-CO2P00403 227 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 IGKV1-5P01602 117 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 MFAP4P55083 255 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 ERHP84090 104 aaKnown RBP11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 TRIM16LQ309B1 348 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 FAAP20Q6NZ36 180 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 STEAP1BQ6NZ63 245 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 CLVS1Q8IUQ0 354 aaPredicted RBP11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 CCDC71LQ8N9Z2 235 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 OR13C8Q8NGS7 320 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 ZFAND1Q8TCF1 268 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 GGTLC1Q9BX51 225 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 C5orf66Q9H5L9 145 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 UBQLN2Q9UHD9 624 aa11.74□□□□□ -0.53
CCDC88B-205ENST00000472524 I3L2K1 104 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 NUPL2O15504 423 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 CD74P04233 296 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 CTSGP08311 255 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms