RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR9G1Q8NH87 305 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 A0A0G2JLM5 398 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 CALYQ9NYX4 217 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 FAM157AC9JC47 383 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 IL11P20809 199 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 GGTLC3B5MD39 225 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 FAM57AQ8TBR7 257 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 DLX4Q92988 240 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-209ENST00000472056 HS3ST3B1Q9Y662 390 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 A0A1W2PPV9 198 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 SHISA7A6NL88 538 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 PRR33A8MZF0 331 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 SHISA8B8ZZ34 492 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 DRD3P35462 400 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 FAM166AQ6J272 317 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 GOLT1AQ6ZVE7 132 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 C9orf40Q8IXQ3 194 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 FZR1Q9UM11 496 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 VEGFBP49765 207 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 TDHQ8IZJ6 230 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 IGHV1-69-2A0A0G2JMI3 117 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 CEACAM4O75871 244 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 PAX2Q02962 417 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 SLC25A48Q6ZT89 311 aaKnown RBP11.36□□□□□ -0.59
COL6A3-209ENST00000472056 GDF15Q99988 308 aa11.36□□□□□ -0.59
COL6A3-209ENST00000472056 CDK2AP2O75956 126 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 CCL2P13500 99 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 PLAURQ03405 335 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 WBP1LQ9NX94 342 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 ESDP10768 282 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 ARPC1AQ92747 370 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 WNT10AQ9GZT5 417 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 IGLV1-36A0A0B4J1U3 117 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 NXPH1P58417 271 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 C1orf194Q5T5A4 169 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 A0A1W2PRE2 83 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 PCSK4Q6UW60 755 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 IGKV3-7A0A075B6H7 116 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 IFI27P40305 119 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-209ENST00000472056 MYEOVQ96EZ4 313 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 DLL3Q9NYJ7 618 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 NPIPB11E5RHQ5 1161 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 MORN3Q6PF18 240 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-209ENST00000472056 RND2P52198 227 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 ATOH7Q8N100 152 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BLQ99880 126 aa11.35□□□□□ -0.59
COL6A3-209ENST00000472056 ADRA2AP08913 450 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 ATP5G2Q06055 141 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 TMEM86BQ8N661 226 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 MEGF9Q9H1U4 602 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 BOD1L2Q8IYS8 172 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 CLEC7AQ9BXN2 247 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 LY96Q9Y6Y9 160 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 A0A1B0GTI1 187 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 LILRA6Q6PI73 481 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 DRAM1Q8N682 238 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 UCNP55089 124 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 LHFPL6Q9Y693 200 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 FXYD3Q14802 87 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 SPINK14Q6IE38 97 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 KLHDC2Q9Y2U9 406 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 KLK10O43240 276 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 SOX8P57073 446 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 DNAJC30Q96LL9 226 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 AGMATQ9BSE5 352 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 OTORQ9NRC9 128 aa11.34□□□□□ -0.59
COL6A3-209ENST00000472056 PSG4Q00888 419 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 SLC25A15Q9Y619 301 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 FAM214BQ7L5A3 538 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 UBE2V1Q13404 147 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 ZNF818PQ6ZRF7 136 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 SIRT4Q9Y6E7 314 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-209ENST00000472056 PRKNO60260 465 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-209ENST00000472056 SERF1AO75920 110 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 FER1L6-AS1Q8NA97 138 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 PLXNA4Q9HCM2 1894 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 C9JCJ5 164 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 SLC50A1Q9BRV3 221 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 SPG11Q96JI7 2443 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 FGF16O43320 207 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 ZNF688P0C7X2 276 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 GUSBP11Q6P575 273 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 OR52E5Q8NH55 327 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 CRPP02741 224 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 CD5P06127 495 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 RTN4RL2Q86UN3 420 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 COQ2Q96H96 371 aa11.33□□□□□ -0.6
COL6A3-209ENST00000472056 MRPL27Q9P0M9 148 aaKnown RBP11.33□□□□□ -0.6
COL6A3-209ENST00000472056 WDR82Q6UXN9 313 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 WNT2BQ93097 391 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 KIAA1549LQ6ZVL6 1849 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 H3BUT2 72 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 C1orf162Q8NEQ5 155 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-209ENST00000472056 C1orf53Q5VUE5 145 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 R4GN57 208 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 TRBV20-1A0A075B6N2 111 aa11.32□□□□□ -0.6
COL6A3-209ENST00000472056 OTX1P32242 354 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-209ENST00000472056 OR9G9P0C7N8 305 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 EDA2RQ9HAV5 297 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 UMODP07911 640 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms