RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TMEM14EPQ6UXP3 125 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 JMJD1CQ15652 2540 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 IGLV3-9A0A075B6K5 115 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 SCO2A0A1W2PP80 73 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 SLC17A3O00476 420 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 TIMD4Q96H15 378 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 ZNF729A6NN14 1252 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 E7EUB6 86 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 COX7A2P2O60397 106 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 FABP4P15090 132 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 TDGF1P3P51864 188 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 ZNF672Q499Z4 452 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 NPVFQ9HCQ7 196 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 IL6RP08887 468 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 LYZP61626 148 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 KLRB1Q12918 225 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 KHDC3LQ587J8 217 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 COMMD1Q8N668 190 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 OR10D4PQ8NGN7 298 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 OR4X1Q8NH49 305 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 NEIL1Q96FI4 390 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 METTL1Q9UBP6 276 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 LINC00527Q9UJ94 153 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 MDFIC2A0A1B0GVS7 189 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 GNLYP22749 145 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 CRYBB3P26998 211 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 GALR1P47211 349 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 SERF2P84101 59 aa11.22□□□□□ -0.61
CCDC88A-211ENST00000471947 BTBD17A6NE02 478 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 PPP5D1E7EU14 171 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 CLDN34H7C241 214 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 LINC00869P0C866 280 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 PYYP10082 97 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 ZNF835Q9Y2P0 537 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 MSRB2Q9Y3D2 182 aa11.21□□□□□ -0.61
CCDC88A-211ENST00000471947 UBE2L3P68036 154 aaKnown RBP11.21□□□□□ -0.62
CCDC88A-211ENST00000471947 ZNF90Q03938 601 aa11.21□□□□□ -0.62
CCDC88A-211ENST00000471947 VMA21Q3ZAQ7 101 aa11.21□□□□□ -0.62
CCDC88A-211ENST00000471947 MGST2Q99735 147 aa11.21□□□□□ -0.62
CCDC88A-211ENST00000471947 VKORC1Q9BQB6 163 aa11.21□□□□□ -0.62
CCDC88A-211ENST00000471947 ELOVL5Q9NYP7 299 aa11.21□□□□□ -0.62
CCDC88A-211ENST00000471947 F6UZH7 168 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 ERVFC1-1P60608 527 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 SSBP2P81877 361 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 SRSF7Q16629 238 aaKnown RBP eCLIP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 ARSJQ5FYB0 599 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 TCF23Q7RTU1 214 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 GPR61Q9BZJ8 451 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 IFT22Q9H7X7 185 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 ZNF430Q9H8G1 570 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 FUT9Q9Y231 359 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 IGKV3-7A0A075B6H7 116 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 IGHV3-49A0A0A0MS15 119 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 TEX50A0A1B0GTY4 177 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 MT-CO2P00403 227 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 HABP2Q14520 560 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 OR1L8Q8NGR8 309 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 POM121Q96HA1 1249 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 NABP2Q9BQ15 211 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 SSBP3Q9BWW4 388 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 RYDENQ9NUL5 291 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 SHISA9B4DS77 424 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 SOD3P08294 240 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 AREGP15514 252 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 ZNF506Q5JVG8 444 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 OR8B3Q8NGG8 313 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 OR8B2Q96RD0 313 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 RAB1BQ9H0U4 201 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 LINC00312Q9Y6C7 94 aa11.2□□□□□ -0.62
CCDC88A-211ENST00000471947 C15orf61A6NNL5 157 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 LINC00479Q96M42 142 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 GNB4Q9HAV0 340 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 PRNDQ9UKY0 176 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 DCHS2Q6V1P9 2916 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 MBP02144 154 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 PRB1P04280 392 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 ATP6V1FQ16864 119 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 KIAA1644Q3SXP7 199 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 C15orf54Q8N8G6 183 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 KMT2EQ8IZD2 1858 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 NPIPB11E5RHQ5 1161 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 CA1P00915 261 aaPredicted RBP11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 CD81P60033 236 aa11.19□□□□□ -0.62
CCDC88A-211ENST00000471947 UTP20O75691 2785 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 TRBV23-1A0A0A0MS06 115 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 FAM90A26D6RGX4 464 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 RAB1CQ92928 201 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 GGTLC1Q9BX51 225 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 PRO1933Q9H354 126 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 FCN1O00602 326 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 PPP1R2P9O14990 202 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 IL3RAP26951 378 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 MRPL54Q6P161 138 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 OR5AU1Q8NGC0 362 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 MALSU1Q96EH3 234 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 PTPRBP23467 1997 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 B9A039 149 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 LHBP01229 141 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 LOXP28300 417 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 GPR6P46095 362 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms