RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SFT2D2O95562 160 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 TCRBP04435 133 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 TRAPPC2P0DI81 140 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 TRAPPC2BP0DI82 140 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 VAMP1P23763 118 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 TPPP2P59282 170 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 IFITM3Q01628 133 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 PPP1R1AQ13522 171 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 KIAA0141Q14154 515 aaPredicted RBP9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 IZUMO4Q1ZYL8 232 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 MZT2BQ6NZ67 158 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 ZNF429Q86V71 674 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 LGI3Q8N145 548 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 SLC35G3Q8N808 338 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 ZNF491Q8N8L2 437 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 SORL1Q92673 2214 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 LSM10Q969L4 123 aaKnown RBP9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 MS4A10Q96PG2 267 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 DUX3Q96PT4 197 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 C20orf85Q9H1P6 137 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 ZNF355PQ9NSJ1 428 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 FLVCR2Q9UPI3 526 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 ZNF257Q9Y2Q1 563 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 A0A0G2JRQ6 117 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 IGLC7A0M8Q6 106 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 RBMXL2O75526 392 aaKnown RBP9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 TRGV3P03979 118 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 CRYGCP07315 174 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 AREGP15514 252 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 PSMB6P28072 239 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 RAB25P57735 213 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 RUNX1Q01196 453 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 DEFB136Q30KP8 78 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 HSD17B13Q7Z5P4 300 aaPredicted RBP9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 NDUFA4L2Q9NRX3 87 aa9.17□□□□□ -0.94
SQSTM1-206ENST00000466342 A0A0B4J293 547 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 A0A0B4J2A0 478 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 FAM240BA0A1B0GVZ2 78 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 DUXBA0A1W2PPF3 345 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 C9orf170A2RU37 121 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 I3L521 148 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 HLA-AP01891 365 aaKnown RBP9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 REG1AP05451 166 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 OR4E1P0C645 316 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 CTRB1P17538 263 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 ANXA7P20073 488 aaKnown RBP9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 FHL3Q13643 280 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 ANKRD55Q3KP44 614 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 C9orf66Q5T8R8 295 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 CTRB2Q6GPI1 263 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 LRTM2Q8N967 370 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 OR11H1Q8NG94 326 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 OR10W1Q8NGF6 305 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 GPR146Q96CH1 333 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 HINT2Q9BX68 163 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 GNB4Q9HAV0 340 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 NUDT15Q9NV35 164 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 SHPKQ9UHJ6 478 aa9.16□□□□□ -0.94
SQSTM1-206ENST00000466342 TRAV6A0A075B6T7 132 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 TRBV9A0A0B4J1U6 114 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 A0A0G2JLM5 398 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 FAM223BA6NKX1 122 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 ST8SIA3O43173 380 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 DHFRP00374 187 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 PRH1P02810 166 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 OR8U8P0C7N1 319 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 HSPE1P61604 102 aaKnown RBP9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 PRCDQ00LT1 54 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 WT1-ASQ06250 92 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 ZNF616Q08AN1 781 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 DHRS2Q13268 280 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 KLK9Q2XQG4 91 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 NMSQ5H8A3 153 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 Q6ZRM9 215 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 LYZL2Q7Z4W2 148 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 LYG2Q86SG7 212 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 FAM223AQ8IWN6 122 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 ENKURQ8TC29 256 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 PDCD10Q9BUL8 212 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 ALX4Q9H161 411 aaPredicted RBP9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 EDA2RQ9HAV5 297 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 CACNG5Q9UF02 275 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 KLK9Q9UKQ9 250 aa9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 ZNF256Q9Y2P7 627 aaPredicted RBP9.15□□□□□ -0.94
SQSTM1-206ENST00000466342 C13orf42A0A1B0GVH6 325 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 IFNA17P01571 189 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 LGALS1P09382 135 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 SULT1A3P0DMM9 295 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 SULT1A4P0DMN0 295 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 OR13C7P0DN81 318 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 DEFA4P12838 97 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 INSL3P51460 131 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 MECP2P51608 486 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 DEFA1P59665 94 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 DEFA3P59666 94 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 RHOGP84095 191 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 DEFA5Q01523 94 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 AARDQ4LEZ3 155 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 C4orf46Q504U0 113 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 C19orf35Q6ZS72 473 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms