RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TUBG2Q9NRH3 451 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 TMEM106BQ9NUM4 274 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 TCF21O43680 179 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 C1QTNF9P0C862 333 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 SAA1P0DJI8 122 aaPredicted RBP9.84□□□□□ -0.83
SMPD4-213ENST00000454468 GRNP28799 593 aaKnown RBP9.84□□□□□ -0.83
SMPD4-213ENST00000454468 ZNF90Q03938 601 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 OR2T6Q8NHC8 308 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 UHRF2Q96PU4 802 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 SMDT1Q9H4I9 107 aa9.84□□□□□ -0.83
SMPD4-213ENST00000454468 CSPG4Q6UVK1 2322 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.83□□□□□ -0.84
SMPD4-213ENST00000454468 SCO2A0A1W2PP80 73 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 IL6RP08887 468 aaPredicted RBP9.83□□□□□ -0.84
SMPD4-213ENST00000454468 LOXL3P58215 753 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 MRPL41Q8IXM3 137 aaKnown RBP9.83□□□□□ -0.84
SMPD4-213ENST00000454468 OR9G1Q8NH87 305 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 SSUH2Q9Y2M2 353 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 HILPDAQ9Y5L2 63 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 GFRA3O60609 400 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 CCKARP32238 428 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 ERVFC1-1P60608 527 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 RPL23P62829 140 aaKnown RBP9.83□□□□□ -0.84
SMPD4-213ENST00000454468 PNRC1Q12796 327 aaPredicted RBP9.83□□□□□ -0.84
SMPD4-213ENST00000454468 KCNIP4Q6PIL6 250 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 ZNF705AQ6ZN79 300 aaPredicted RBP9.83□□□□□ -0.84
SMPD4-213ENST00000454468 C19orf35Q6ZS72 473 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 MBD3L1Q8WWY6 194 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 S4R3C0 116 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 COL12A1Q99715 3063 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 TGOLN2O43493 480 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 KBTBD11O94819 623 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 RHOBP62745 196 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 MIR17HGQ75NE6 70 aa9.83□□□□□ -0.84
SMPD4-213ENST00000454468 SRRM4A7MD48 611 aaKnown RBP9.82□□□□□ -0.84
SMPD4-213ENST00000454468 SLC17A3O00476 420 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 NUTF2P61970 127 aaKnown RBP9.82□□□□□ -0.84
SMPD4-213ENST00000454468 TBR1Q16650 682 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 ANKRD39Q53RE8 183 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 OR2T10Q8NGZ9 312 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 SGMS2Q8NHU3 365 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 MGST2Q99735 147 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 HIVEP3Q5T1R4 2406 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 NOTCH3Q9UM47 2321 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 XKRY2A2RUG3 117 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 A6NNC1 897 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 RPL29P47914 159 aaKnown RBP9.82□□□□□ -0.84
SMPD4-213ENST00000454468 TMEM200BQ69YZ2 307 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 MANBALQ9NQG1 85 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 WDR83OSQ9Y284 106 aa9.82□□□□□ -0.84
SMPD4-213ENST00000454468 SMG1Q96Q15 3661 aaKnown RBP9.82□□□□□ -0.84
SMPD4-213ENST00000454468 EREGO14944 169 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BKO60814 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BJP06899 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H1BP16401 226 aaKnown RBP9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BOP23527 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BBP33778 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BDP58876 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BCP62807 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 FXYD3Q14802 87 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST2H2BEQ16778 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BHQ93079 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BNQ99877 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 HIST1H2BMQ99879 126 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 PRNDQ9UKY0 176 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 COX7A2P2O60397 106 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 MOSP00540 346 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 CT45A6P0DMU7 189 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 CT45A5P0DMU8 189 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 CT45A7P0DMV0 189 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 AGAP20933 346 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 CRYBB3P26998 211 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 ARF6P62330 175 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 RPL8P62917 257 aaKnown RBP9.81□□□□□ -0.84
SMPD4-213ENST00000454468 OR5I1Q13606 314 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 C1orf174Q8IYL3 243 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 KIR3DL3Q8N743 410 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 NPIPB3Q92617 1050 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 RNASE6Q93091 150 aaKnown RBP9.81□□□□□ -0.84
SMPD4-213ENST00000454468 KMT2EQ8IZD2 1858 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 IGHV1-69-2A0A0G2JMI3 117 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 C15orf61A6NNL5 157 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 KIR2DS2P43631 304 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 IGFL3Q6UXB1 125 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 ZNF788Q6ZQV5 615 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 TCTEX1D1Q8N7M0 179 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 ADTRPQ96IZ2 230 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 NEU1Q99519 415 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 GGTLC1Q9BX51 225 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 LPAR2Q9HBW0 351 aa9.81□□□□□ -0.84
SMPD4-213ENST00000454468 RPUSD1Q9UJJ7 312 aaKnown RBP9.81□□□□□ -0.84
SMPD4-213ENST00000454468 ZCCHC14Q8WYQ9 949 aaKnown RBP9.8□□□□□ -0.84
SMPD4-213ENST00000454468 NABP2Q9BQ15 211 aa9.8□□□□□ -0.84
SMPD4-213ENST00000454468 INSIG2Q9Y5U4 225 aa9.8□□□□□ -0.84
SMPD4-213ENST00000454468 TRAV5A0A0B4J249 113 aa9.8□□□□□ -0.84
SMPD4-213ENST00000454468 CEACAM4O75871 244 aa9.8□□□□□ -0.84
SMPD4-213ENST00000454468 ARSJQ5FYB0 599 aaPredicted RBP9.8□□□□□ -0.84
SMPD4-213ENST00000454468 MUC15Q8N387 334 aa9.8□□□□□ -0.84
SMPD4-213ENST00000454468 OR1B1Q8NGR6 318 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms