RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 OR9G1Q8NH87 305 aa9.82□□□□□ -0.84
MSH6-204ENST00000445503 PARD6GQ9BYG4 376 aaPredicted RBP9.82□□□□□ -0.84
MSH6-204ENST00000445503 IGHV1-18A0A0C4DH31 117 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 SS18L1O75177 396 aaPredicted RBP9.81□□□□□ -0.84
MSH6-204ENST00000445503 LINC00869P0C866 280 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 COL5A1P20908 1838 aaPredicted RBP9.81□□□□□ -0.84
MSH6-204ENST00000445503 LBHQ53QV2 105 aaPredicted RBP9.81□□□□□ -0.84
MSH6-204ENST00000445503 KRTCAP3Q53RY4 240 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 EAF1Q96JC9 268 aaPredicted RBP9.81□□□□□ -0.84
MSH6-204ENST00000445503 TXNDC17Q9BRA2 123 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 HES4Q9HCC6 221 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 IGKV1D-17A0A075B6S4 117 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 APCSP02743 223 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 PRB4P10163 310 aaPredicted RBP9.81□□□□□ -0.84
MSH6-204ENST00000445503 OR2D3Q8NGH3 330 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 OR1B1Q8NGR6 318 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 VSTM5A8MXK1 200 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 RELBQ01201 579 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 Q56UQ5 140 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 WDR73Q6P4I2 378 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 OR10W1Q8NGF6 305 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 ADTRPQ96IZ2 230 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 GP6Q9HCN6 339 aa9.81□□□□□ -0.84
MSH6-204ENST00000445503 TMEM265A0A087WTH1 108 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 hADV38S2A0JD32 116 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 TFPI2P48307 235 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 HCP5Q6MZN7 132 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 SNHG12Q9BXW3 62 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 POLR3KQ9Y2Y1 108 aaPredicted RBP9.8□□□□□ -0.84
MSH6-204ENST00000445503 TBL2Q9Y4P3 447 aaKnown RBP9.8□□□□□ -0.84
MSH6-204ENST00000445503 TRAV5A0A0B4J249 113 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 A0A1W2PNU3 283 aaPredicted RBP9.8□□□□□ -0.84
MSH6-204ENST00000445503 SP9P0CG40 484 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 CD59P13987 128 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 ZNF134P52741 427 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 SUB1P53999 127 aaKnown RBP eCLIP9.8□□□□□ -0.846e-8■■■□□ 14.9
MSH6-204ENST00000445503 PRB3Q04118 309 aaPredicted RBP9.8□□□□□ -0.84
MSH6-204ENST00000445503 DUX4L9Q6RFH8 374 aaPredicted RBP9.8□□□□□ -0.84
MSH6-204ENST00000445503 C11orf53Q8IXP5 236 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 GCSAMQ8N6F7 178 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 ZNF355PQ9NSJ1 428 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 ARL2-SNX15V9GYD0 113 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 NCKAP5O14513 1909 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 FOXL1Q12952 345 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 ARSJQ5FYB0 599 aaPredicted RBP9.8□□□□□ -0.84
MSH6-204ENST00000445503 CT45A1Q5HYN5 189 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 WDR31Q8NA23 367 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 OR2T6Q8NHC8 308 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 CT45A3Q8NHU0 189 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 PYGO2Q9BRQ0 406 aa9.8□□□□□ -0.84
MSH6-204ENST00000445503 YPEL1O60688 119 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 ZNF137PP52743 207 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 BRWD1-AS2P59051 145 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 SPATA45Q537H7 98 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 RNASEH2CQ8TDP1 164 aaKnown RBP9.79□□□□□ -0.84
MSH6-204ENST00000445503 NPIPB3Q92617 1050 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 YPEL2Q96QA6 119 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 C2orf88Q9BSF0 95 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 CACNA1BQ00975 2339 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 COL4A2P08572 1712 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 C15orf61A6NNL5 157 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 PMS2P5A8MQ11 134 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 M0R296 226 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 CD99P14209 185 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 RNF24Q9Y225 148 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 TECTAO75443 2155 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 M0R2Z0 102 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 NUTF2P61970 127 aaKnown RBP9.79□□□□□ -0.84
MSH6-204ENST00000445503 C10orf113Q5VZT2 155 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 FLYWCH2Q96CP2 140 aaKnown RBP9.79□□□□□ -0.84
MSH6-204ENST00000445503 PAXXQ9BUH6 204 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 GOLT1BQ9Y3E0 138 aa9.79□□□□□ -0.84
MSH6-204ENST00000445503 TRBV20OR9-2A0A075B6H5 130 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 F2Z2F3 143 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 C8orf88P0DMB2 117 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 CDKN1AP38936 164 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 GPR6P46095 362 aaPredicted RBP9.78□□□□□ -0.84
MSH6-204ENST00000445503 SNRNP40Q96DI7 357 aaKnown RBP9.78□□□□□ -0.84
MSH6-204ENST00000445503 LINC00479Q96M42 142 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 FRMD6-AS1P0C7T7 363 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 FAM27E3Q08E93 113 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 GNB4Q9HAV0 340 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 AKAP6Q13023 2319 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 KBTBD11-OT1A0A1B0GTJ5 212 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 SRRM5B3KS81 715 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 MKRN2OSH3BPM6 223 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 CLEC3BP05452 202 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 CSN3P07498 182 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 PYYP10082 97 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 C1orf194Q5T5A4 169 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 PEAR1Q5VY43 1037 aaPredicted RBP9.78□□□□□ -0.84
MSH6-204ENST00000445503 CENPVQ7Z7K6 275 aaPredicted RBP9.78□□□□□ -0.84
MSH6-204ENST00000445503 OR1L8Q8NGR8 309 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 IDI2-AS1Q9NZ38 188 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 AMMECR1Q9Y4X0 333 aaPredicted RBP9.78□□□□□ -0.84
MSH6-204ENST00000445503 TCF21O43680 179 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 CCL3L1P16619 93 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 C10orf55Q5SWW7 151 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 ST6GALNAC3Q8NDV1 305 aa9.78□□□□□ -0.84
MSH6-204ENST00000445503 PRR7Q8TB68 274 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms