RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 HAGHQ16775 308 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 BSXQ3C1V8 233 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 ZNF114Q8NC26 417 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 NPBQ8NG41 125 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 OR1P1Q8NH06 330 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 SRSF12Q8WXF0 261 aaKnown RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 NKX6-2Q9C056 277 aaPredicted RBP4.85□□□□□ -1.63
VPS50-205ENST00000441602 SLC25A22Q9H936 323 aa4.85□□□□□ -1.63
VPS50-205ENST00000441602 A1L4Q6 167 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 B4DSR2 109 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 HAX1O00165 279 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 OR10J1P30954 320 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 C5orf64Q2M2E5 130 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 ACSM6Q6P461 480 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 SPSB3Q6PJ21 355 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 RXFP4Q8TDU9 374 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 MISP3Q96FF7 219 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 ACY3Q96HD9 319 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 PFDN5Q99471 154 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 RASL11BQ9BPW5 248 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 SLC45A2Q9UMX9 530 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 CHD8Q9HCK8 2581 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 ZFP92A6NM28 416 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 NCBP2LA6PVI3 153 aaKnown RBP4.84□□□□□ -1.63
VPS50-205ENST00000441602 VWC2LB2RUY7 222 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 SEC14L6B5MCN3 397 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 PRSS46E5RG02 174 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 NDUFA3O95167 84 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 CXorf1O96002 111 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 DEFA4P12838 97 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 MYOD1P15172 320 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 MDKP21741 143 aaPredicted RBP4.84□□□□□ -1.63
VPS50-205ENST00000441602 S100A7P31151 101 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 CLEC12BQ2HXU8 276 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 TMEM249Q2WGJ8 235 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 MIC13Q5XKP0 118 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 HCP5Q6MZN7 132 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 RAB24Q969Q5 203 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 TBX15Q96SF7 602 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 MRPL32Q9BYC8 188 aaKnown RBP4.84□□□□□ -1.63
VPS50-205ENST00000441602 TECRQ9NZ01 308 aaKnown RBP4.84□□□□□ -1.63
VPS50-205ENST00000441602 MUC3AQ02505 3323 aa4.84□□□□□ -1.63
VPS50-205ENST00000441602 M0R036 132 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 MSMBP08118 114 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 FBP1P09467 338 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 PAX2Q02962 417 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 PAX8Q06710 450 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 FXYD3Q14802 87 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 ARSJQ5FYB0 599 aaPredicted RBP4.84□□□□□ -1.64
VPS50-205ENST00000441602 C10orf55Q5SWW7 151 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 CYP2G1PQ6ZSU1 146 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 SLC35E3Q7Z769 313 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 OR10W1Q8NGF6 305 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 CFHR4Q92496 578 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 MGST2Q99735 147 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 THYN1Q9P016 225 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 PRELID1Q9Y255 219 aa4.84□□□□□ -1.64
VPS50-205ENST00000441602 LSM4Q9Y4Z0 139 aaKnown RBP4.84□□□□□ -1.64
VPS50-205ENST00000441602 F11RQ9Y624 299 aaKnown RBP4.84□□□□□ -1.64
VPS50-205ENST00000441602 IGHV4-61A0A0C4DH41 118 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 J3QKU1 62 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 PRB3Q04118 309 aaPredicted RBP4.83□□□□□ -1.64
VPS50-205ENST00000441602 EBI3Q14213 229 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 C10orf91Q5T1B1 145 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 LHFPL4Q7Z7J7 247 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 LRRC75A-AS1Q8N1F1 130 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 STPG3Q8N7X2 389 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 GATAD1Q8WUU5 269 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 SSMEM1Q8WWF3 244 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 UHRF2Q96PU4 802 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 TMEM167BQ9NRX6 74 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 DOCK11Q5JSL3 2073 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 IGHV1-69DA0A0B4J2H0 117 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 IGLC7A0M8Q6 106 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 F6UZH7 168 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 J3QLI3 93 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 COX7A2P2O60397 106 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 IGHV1-69P01742 117 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 HIST1H1BP16401 226 aaKnown RBP4.83□□□□□ -1.64
VPS50-205ENST00000441602 CEBPGP53567 150 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 DLX1P56177 255 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 FAM74A3Q4VXF1 159 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 TEX29Q8N6K0 151 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 ARPC1AQ92747 370 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 TMEM68Q96MH6 324 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 NIPSNAP3BQ9BS92 247 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 RNF24Q9Y225 148 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 RFNGQ9Y644 331 aa4.83□□□□□ -1.64
VPS50-205ENST00000441602 FAM157AC9JC47 383 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 SRP19P09132 144 aaKnown RBP4.82□□□□□ -1.64
VPS50-205ENST00000441602 SAA4P35542 130 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 NPBWR1P48145 328 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 RND2P52198 227 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 FGF8P55075 233 aaPredicted RBP4.82□□□□□ -1.64
VPS50-205ENST00000441602 WT1-ASQ06250 92 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 GAMTQ14353 236 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 ICAM4Q14773 271 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 RPP25LQ8N5L8 163 aaKnown RBP4.82□□□□□ -1.64
VPS50-205ENST00000441602 LINC01356Q8N9X3 169 aa4.82□□□□□ -1.64
VPS50-205ENST00000441602 TMEM170AQ8WVE7 144 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms