RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SELLP14151 372 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 CD40P25942 277 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF90Q03938 601 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 CD69Q07108 199 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 Q0VG73 95 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 SPATA31B1PQ5VZV4 182 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 WDR73Q6P4I2 378 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 MRPL52Q86TS9 123 aaKnown RBP11.16□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF714Q96N38 554 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 GNB1LQ9BYB4 327 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 CNOT1A5YKK6 2376 aaKnown RBP11.15□□□□□ -0.62
COL6A3-207ENST00000433762 DYSFO75923 2080 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 A0A1W2PN81 502 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 RNASE2P10153 161 aaKnown RBP11.15□□□□□ -0.62
COL6A3-207ENST00000433762 ADMP35318 185 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 RANP62826 216 aaKnown RBP11.15□□□□□ -0.62
COL6A3-207ENST00000433762 LINC00311Q8N616 119 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 VSTM2AQ8TAG5 236 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 FAM57AQ8TBR7 257 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 PRO1933Q9H354 126 aa11.15□□□□□ -0.62
COL6A3-207ENST00000433762 PTPRZ1P23471 2315 aaPredicted RBP11.15□□□□□ -0.63
COL6A3-207ENST00000433762 HELTA6NFD8 242 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 PGPEP1LA6NFU8 196 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 USF1P22415 310 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-207ENST00000433762 GNG4P50150 75 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 MIR17HGQ75NE6 70 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 OR5AN1Q8NGI8 311 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 LEAP2Q969E1 77 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 V9GYV3 84 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 ISLRO14498 428 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 IGHV3-7P01780 117 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 OR10J1P30954 320 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 PSG5Q15238 335 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 UTF1Q5T230 341 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 CCL13Q99616 98 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 NDUFA4L2Q9NRX3 87 aa11.14□□□□□ -0.63
COL6A3-207ENST00000433762 KIR2DL5BA0A0G2JN68 375 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 KIR2DL5BA0A0G2JPC4 375 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 OR4A8P0C604 315 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 C8orf88P0DMB2 117 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 BMP5P22003 454 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 TPPP2P59282 170 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 TAS2R60P59551 318 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 ERHP84090 104 aaKnown RBP11.13□□□□□ -0.63
COL6A3-207ENST00000433762 C1orf194Q5T5A4 169 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 VHLLQ6RSH7 139 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 KIR2DL5AQ8N109 375 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 CMTM2Q8TAZ6 248 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 TMEM167AQ8TBQ9 72 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 AURKAIP1Q9NWT8 199 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-207ENST00000433762 ZNF705GA8MUZ8 300 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-207ENST00000433762 FOXH1O75593 365 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 SAA1P0DJI8 122 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-207ENST00000433762 TIGITQ495A1 244 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 FAM201AQ5SY85 155 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 TMEM108Q6UXF1 575 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 PDPNQ86YL7 162 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 MMD2Q8IY49 270 aa11.13□□□□□ -0.63
COL6A3-207ENST00000433762 GNG10P50151 68 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 ZNF137PP52743 207 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 CX3CL1P78423 397 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 HLA-DRB5Q30154 266 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 CENPWQ5EE01 88 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 FAM216BQ8N7L0 139 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 ZNF503Q96F45 646 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 MS4A10Q96PG2 267 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 SLC25A33Q9BSK2 321 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 MRPL18Q9H0U6 180 aaKnown RBP11.12□□□□□ -0.63
COL6A3-207ENST00000433762 NAGKQ9UJ70 344 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 IGKV1OR2-108A0A075B7D4 117 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 PSMB11A5LHX3 300 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 SRRM4A7MD48 611 aaKnown RBP11.12□□□□□ -0.63
COL6A3-207ENST00000433762 H0YJW9 148 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 IGKV1-16P04430 117 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 CRISP2P16562 243 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 RPL8P62917 257 aaKnown RBP11.12□□□□□ -0.63
COL6A3-207ENST00000433762 RASL11AQ6T310 242 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 TMEM186Q96B77 213 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 HINT2Q9BX68 163 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 COMMD5Q9GZQ3 224 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 URB1O60287 2271 aaKnown RBP11.12□□□□□ -0.63
COL6A3-207ENST00000433762 CEP250Q9BV73 2442 aa11.12□□□□□ -0.63
COL6A3-207ENST00000433762 PPOXP50336 477 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 ERVFC1-1P60608 527 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 PRSS8Q16651 343 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 DUX4L9Q6RFH8 374 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-207ENST00000433762 OR1L6Q8NGR2 347 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 OR1L4Q8NGR5 311 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 TMEM106BQ9NUM4 274 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 C17orf100A8MU93 164 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 MMP23AO75900 390 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 SUB1P53999 127 aaKnown RBP eCLIP11.11□□□□□ -0.63
COL6A3-207ENST00000433762 OR10J3Q5JRS4 329 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 TMEM256Q8N2U0 113 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 OR4C13Q8NGP0 309 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 IGF2BP2-AS1Q96M15 143 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 HARBI1Q96MB7 349 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 CDC42EP3Q9UKI2 254 aa11.11□□□□□ -0.63
COL6A3-207ENST00000433762 THAP8Q8NA92 274 aa11.1□□□□□ -0.63
COL6A3-207ENST00000433762 DMXL1Q9Y485 3027 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms