RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 TMEM183BQ1AE95 376 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 C10orf55Q5SWW7 151 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 TRAT1Q6PIZ9 186 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 Q8N7P7 452 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 MCRIP2Q9BUT9 160 aaKnown RBP10.28□□□□□ -0.76
CDH3-202ENST00000429102 TP53TG3Q9ULZ0 132 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 TBL2Q9Y4P3 447 aaKnown RBP10.28□□□□□ -0.76
CDH3-202ENST00000429102 ZGRF1Q86YA3 2104 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 J3QR06 171 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 STAG3L2P0CL84 134 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 STAG3L3P0CL85 134 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 PYYP10082 97 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 HNRNPA3P51991 378 aaKnown RBP10.28□□□□□ -0.76
CDH3-202ENST00000429102 RPP30P78346 268 aaKnown RBP10.28□□□□□ -0.76
CDH3-202ENST00000429102 RPEL1Q2QD12 228 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 MRPS18CQ9Y3D5 142 aaKnown RBP10.28□□□□□ -0.76
CDH3-202ENST00000429102 LRBAP50851 2863 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 SAA2-SAA4A0A096LPE2 208 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 M0QZ24 198 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 SAA2P0DJI9 122 aaPredicted RBP10.28□□□□□ -0.76
CDH3-202ENST00000429102 PMCHL1Q16048 86 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 TIGITQ495A1 244 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 FAM168AQ92567 244 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 BORCS7Q96B45 105 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 NABP2Q9BQ15 211 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 ZNF355PQ9NSJ1 428 aa10.28□□□□□ -0.76
CDH3-202ENST00000429102 A0A1W2PRD5 423 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 A0A1W2PRF3 423 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 A0A1W2PRM7 423 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 PTTG1IPP53801 180 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 RELBQ01201 579 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 RNASEKQ6P5S7 137 aaKnown RBP10.27□□□□□ -0.76
CDH3-202ENST00000429102 C19orf35Q6ZS72 473 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 TMEM178AQ8NBL3 297 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 ZBTB34Q8NCN2 500 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 GMPPAQ96IJ6 420 aaPredicted RBP10.27□□□□□ -0.76
CDH3-202ENST00000429102 CALYQ9NYX4 217 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 FBXL7Q9UJT9 491 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 OR51B2Q9Y5P1 312 aa10.27□□□□□ -0.76
CDH3-202ENST00000429102 COL6A6A6NMZ7 2263 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 TMPRSS2O15393 492 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 SPATA45Q537H7 98 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 CT45A1Q5HYN5 189 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 C1orf194Q5T5A4 169 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 CT45A3Q8NHU0 189 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 H1FXQ92522 213 aaKnown RBP10.27□□□□□ -0.77
CDH3-202ENST00000429102 EAF1Q96JC9 268 aaPredicted RBP10.27□□□□□ -0.77
CDH3-202ENST00000429102 COL12A1Q99715 3063 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 ACP1P24666 158 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 CHRNB4P30926 498 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 KIR2DL2P43627 348 aaPredicted RBP10.27□□□□□ -0.77
CDH3-202ENST00000429102 TDGF1P3P51864 188 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 RANP62826 216 aaKnown RBP10.27□□□□□ -0.77
CDH3-202ENST00000429102 MORN5Q5VZ52 161 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 TPPP3Q9BW30 176 aa10.27□□□□□ -0.77
CDH3-202ENST00000429102 A0A1W2PN81 502 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 ENSAO43768 121 aaKnown RBP10.26□□□□□ -0.77
CDH3-202ENST00000429102 LCN2P80188 198 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 DEFB109BQ30KR1 87 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 GCSAMQ8N6F7 178 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 KIR3DL3Q8N743 410 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 TMEM68Q96MH6 324 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 TET2Q6N021 2002 aaPredicted RBP10.26□□□□□ -0.77
CDH3-202ENST00000429102 P0C879 139 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 ZNF137PP52743 207 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 FOXA3P55318 350 aaPredicted RBP10.26□□□□□ -0.77
CDH3-202ENST00000429102 DNAJC4Q9NNZ3 241 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 IL36BQ9NZH7 164 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 TNRC6AQ8NDV7 1962 aaKnown RBP10.26□□□□□ -0.77
CDH3-202ENST00000429102 ORM2P19652 201 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 OPRK1P41145 380 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 GNG5P63218 68 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 PEAR1Q5VY43 1037 aaPredicted RBP10.26□□□□□ -0.77
CDH3-202ENST00000429102 Q6ZT83 130 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 WDR31Q8NA23 367 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 ARL2-SNX15V9GYD0 113 aa10.26□□□□□ -0.77
CDH3-202ENST00000429102 IGHV2OR16-5A0A0B4J2B6 119 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 IGHV1-18A0A0C4DH31 117 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 C15orf65H3BRN8 121 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 MFAP2P55001 183 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 CENPVQ7Z7K6 275 aaPredicted RBP10.25□□□□□ -0.77
CDH3-202ENST00000429102 SLC35D1Q9NTN3 355 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 HSBP1O75506 76 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 CSN3P07498 182 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 RAB7AP51149 207 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 LINC00310P59036 64 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 UBE2L3P68036 154 aaKnown RBP10.25□□□□□ -0.77
CDH3-202ENST00000429102 SSBP2P81877 361 aaPredicted RBP10.25□□□□□ -0.77
CDH3-202ENST00000429102 COA6Q5JTJ3 125 aaKnown RBP10.25□□□□□ -0.77
CDH3-202ENST00000429102 HCP5Q6MZN7 132 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 INO80CQ6PI98 192 aaPredicted RBP10.25□□□□□ -0.77
CDH3-202ENST00000429102 UBALD2Q8IYN6 164 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 MDS2Q8NDY4 140 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 IFI27L2Q9H2X8 130 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 SPAARA0A1B0GVQ0 90 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 CBY3A6NI87 242 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 TMEM210A6NLX4 147 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 SRRM4A7MD48 611 aaKnown RBP10.25□□□□□ -0.77
CDH3-202ENST00000429102 ZZEF1O43149 2961 aa10.25□□□□□ -0.77
CDH3-202ENST00000429102 MT-CO2P00403 227 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms