RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 M0R381 172 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 FBLN7Q53RD9 439 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 WDR82Q6UXN9 313 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 LINC00614P0C842 121 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 LDLRAD2Q5SZI1 272 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 JKAMPQ9P055 326 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 NDUFA3O95167 84 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 DNAL4O96015 105 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 C1orf174Q8IYL3 243 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 MRAP2Q96G30 205 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 DIRC2Q96SL1 478 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 TM2D1Q9BX74 207 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 MRPS16Q9Y3D3 137 aaKnown RBP12.23□□□□□ -0.45
PTPRU-204ENST00000428026 GPR183P32249 361 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 MEF2CQ06413 473 aaPredicted RBP12.22□□□□□ -0.45
PTPRU-204ENST00000428026 TMEM54Q969K7 222 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 HIST1H2BLQ99880 126 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 TMEM106BQ9NUM4 274 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 C9JCJ5 164 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 COX6B1P14854 86 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 SELENOKQ9Y6D0 94 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 A0A1B0GUT8 65 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 C19orf67A6NJJ6 358 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 HIGD1CA8MV81 97 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 RIPPLY2Q5TAB7 128 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 NEUROG1Q92886 237 aa12.22□□□□□ -0.45
PTPRU-204ENST00000428026 ABHD17AQ96GS6 310 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 IFI27L2Q9H2X8 130 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 RPP21Q9H633 154 aaKnown RBP12.21□□□□□ -0.45
PTPRU-204ENST00000428026 FOXD3Q9UJU5 478 aaPredicted RBP12.21□□□□□ -0.45
PTPRU-204ENST00000428026 CACNA1DQ01668 2161 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 CD59P13987 128 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 TMEM95Q3KNT9 176 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 C1QL4Q86Z23 238 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 LRTM2Q8N967 370 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 DCTN5Q9BTE1 182 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 IGHV3OR16-8A0A075B7F1 116 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 AHRRA9YTQ3 701 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 PLAURQ03405 335 aa12.21□□□□□ -0.45
PTPRU-204ENST00000428026 TRAV30A0A087WSZ9 112 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 LOC390937A0A1W2PQ73 354 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 CXCL1P09341 107 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 IZUMO1RA6ND01 250 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 CD55P08174 381 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 SUMO2P61956 95 aaKnown RBP12.21□□□□□ -0.46
PTPRU-204ENST00000428026 SAPCD1Q5SSQ6 148 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 C10orf128Q5T292 105 aa12.21□□□□□ -0.46
PTPRU-204ENST00000428026 NHP2Q9NX24 153 aaKnown RBP12.21□□□□□ -0.46
PTPRU-204ENST00000428026 PPIAL4CA0A0B4J2A2 164 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 PPIAL4GP0DN37 164 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 HEPN1Q6WQI6 88 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 SCGB3A1Q96QR1 104 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 GNG5P63218 68 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 RAX2Q96IS3 184 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 WFDC1Q9HC57 220 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 DOCK6Q96HP0 2047 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 NDUFS6O75380 124 aaKnown RBP12.2□□□□□ -0.46
PTPRU-204ENST00000428026 FAM201AQ5SY85 155 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 OR9G1Q8NH87 305 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 FGF16O43320 207 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 RLFQ13129 1914 aa12.2□□□□□ -0.46
PTPRU-204ENST00000428026 COLCA2A8K830 154 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 F8VVB4 439 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 F8VWA3 439 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 LY6EQ16553 131 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 TEX45Q8NA69 505 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 NUP37Q8NFH4 326 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 OR13A1Q8NGR1 328 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 NPIPB4C9JG80 1138 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 SHISA5Q8N114 240 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 HIST3H2BBQ8N257 126 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 PNKDQ8N490 385 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 OR52E5Q8NH55 327 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 C18orf12Q96KH6 178 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 RTTNQ86VV8 2226 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 IGKV1D-13A0A0B4J2D9 117 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 NAPSAO96009 420 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 IGKV1-13P0DP09 117 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 PRR31Q5SQ13 230 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 C5orf30Q96GV9 206 aa12.19□□□□□ -0.46
PTPRU-204ENST00000428026 PRB4P10163 310 aaPredicted RBP12.18□□□□□ -0.46
PTPRU-204ENST00000428026 COX5BP10606 129 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 NPPCP23582 126 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 TMEM186Q96B77 213 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 PRR32B1ATL7 298 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 IGFBP3P17936 291 aaPredicted RBP12.18□□□□□ -0.46
PTPRU-204ENST00000428026 IGLV3-21P80748 117 aaPredicted RBP12.18□□□□□ -0.46
PTPRU-204ENST00000428026 FAM106AQ4KMX7 169 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 FAM159AQ6UWV7 190 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 SIGLEC12Q96PQ1 595 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 TIMP4Q99727 224 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 VSIRQ9H7M9 311 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 IFI6P09912 130 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 FOXA2Q9Y261 457 aaPredicted RBP12.18□□□□□ -0.46
PTPRU-204ENST00000428026 TRAV8-2A0A0B4J237 113 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 NPIPB11E5RHQ5 1161 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 FADS6Q8N9I5 356 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 ZNF837Q96EG3 531 aaPredicted RBP12.18□□□□□ -0.46
PTPRU-204ENST00000428026 DEPPQ9NTK1 212 aa12.18□□□□□ -0.46
PTPRU-204ENST00000428026 TMEM50AO95807 157 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms