RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NPY1RP25929 384 aa8.79□□□□□ -1
USP54-204ENST00000422491 GPR12P47775 334 aa8.79□□□□□ -1
USP54-204ENST00000422491 PLGLB1Q02325 96 aa8.79□□□□□ -1
USP54-204ENST00000422491 OR4A47Q6IF82 309 aa8.79□□□□□ -1
USP54-204ENST00000422491 MDP1Q86V88 176 aa8.79□□□□□ -1
USP54-204ENST00000422491 ZNF596Q8TC21 504 aa8.79□□□□□ -1
USP54-204ENST00000422491 FAM216AQ8WUB2 273 aa8.79□□□□□ -1
USP54-204ENST00000422491 CORO2AQ92828 525 aa8.79□□□□□ -1
USP54-204ENST00000422491 NABP2Q9BQ15 211 aa8.79□□□□□ -1
USP54-204ENST00000422491 ZPBPQ9BS86 351 aa8.79□□□□□ -1
USP54-204ENST00000422491 CLEC5AQ9NY25 188 aa8.79□□□□□ -1
USP54-204ENST00000422491 C1RLQ9NZP8 487 aa8.79□□□□□ -1
USP54-204ENST00000422491 WASHC3Q9Y3C0 194 aa8.79□□□□□ -1
USP54-204ENST00000422491 FRYQ5TBA9 3013 aa8.79□□□□□ -1
USP54-204ENST00000422491 CEP290O15078 2479 aa8.79□□□□□ -1
USP54-204ENST00000422491 CACNA1EQ15878 2313 aa8.79□□□□□ -1
USP54-204ENST00000422491 NUDT3O95989 172 aa8.78□□□□□ -1
USP54-204ENST00000422491 CELA3AP09093 270 aa8.78□□□□□ -1
USP54-204ENST00000422491 MFAP2P55001 183 aa8.78□□□□□ -1
USP54-204ENST00000422491 NHLRC2Q8NBF2 726 aa8.78□□□□□ -1
USP54-204ENST00000422491 NUP35Q8NFH5 326 aa8.78□□□□□ -1
USP54-204ENST00000422491 DUSP23Q9BVJ7 150 aa8.78□□□□□ -1
USP54-204ENST00000422491 MUC21A0A0G2JKD1 596 aa8.78□□□□□ -1
USP54-204ENST00000422491 MUC21A0A140T8X8 626 aa8.78□□□□□ -1
USP54-204ENST00000422491 A0A1W2PRE2 83 aa8.78□□□□□ -1
USP54-204ENST00000422491 ERVK-16P61578 105 aa8.78□□□□□ -1
USP54-204ENST00000422491 MUC21Q5SSG8 566 aa8.78□□□□□ -1
USP54-204ENST00000422491 AMMECR1LQ6DCA0 310 aa8.78□□□□□ -1
USP54-204ENST00000422491 ZNF826PQ6ZT77 177 aa8.78□□□□□ -1
USP54-204ENST00000422491 FAM234AQ9H0X4 552 aa8.78□□□□□ -1
USP54-204ENST00000422491 GCM1Q9NP62 436 aa8.78□□□□□ -1
USP54-204ENST00000422491 METRNQ9UJH8 293 aa8.78□□□□□ -1
USP54-204ENST00000422491 C15orf61A6NNL5 157 aa8.78□□□□□ -1
USP54-204ENST00000422491 J3QR06 171 aa8.78□□□□□ -1
USP54-204ENST00000422491 OR7C2O60412 319 aa8.78□□□□□ -1
USP54-204ENST00000422491 SMPD2O60906 423 aa8.78□□□□□ -1
USP54-204ENST00000422491 FOLR3P41439 243 aa8.78□□□□□ -1
USP54-204ENST00000422491 GPR6P46095 362 aaPredicted RBP8.78□□□□□ -1
USP54-204ENST00000422491 GABRA6Q16445 453 aa8.78□□□□□ -1
USP54-204ENST00000422491 FAM231DQ6ZW35 169 aa8.78□□□□□ -1
USP54-204ENST00000422491 C11orf53Q8IXP5 236 aa8.78□□□□□ -1
USP54-204ENST00000422491 PRR7Q8TB68 274 aa8.78□□□□□ -1
USP54-204ENST00000422491 DCTN5Q9BTE1 182 aa8.78□□□□□ -1
USP54-204ENST00000422491 ZNF355PQ9NSJ1 428 aa8.78□□□□□ -1
USP54-204ENST00000422491 FNDC10F2Z333 226 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 M0R1X1 148 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 ADH4P08319 380 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 CXorf67Q86X51 503 aaPredicted RBP8.77□□□□□ -1.01
USP54-204ENST00000422491 OR2V2Q96R30 315 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 SSBP4Q9BWG4 385 aaPredicted RBP8.77□□□□□ -1.01
USP54-204ENST00000422491 PLEKHA3Q9HB20 300 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 CLCF1Q9UBD9 225 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 IGKV1OR2-108A0A075B7D4 117 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 hDV102S1A0JD36 115 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 J3QW42 95 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 TOX4O94842 621 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 TNFSF15O95150 251 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 CCL4P13236 92 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 GATA2P23769 480 aaPredicted RBP8.77□□□□□ -1.01
USP54-204ENST00000422491 REG1BP48304 166 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 CYB561P49447 251 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 LTC4SQ16873 150 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 RPL39P5Q59GN2 51 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 ACP7Q6ZNF0 438 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 PPP1R32Q7Z5V6 425 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 FAM90A1Q86YD7 464 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 BCL2L2Q92843 193 aaPredicted RBP8.77□□□□□ -1.01
USP54-204ENST00000422491 PLPPR2Q96GM1 343 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 LINC00479Q96M42 142 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 LOXL2Q9Y4K0 774 aa8.77□□□□□ -1.01
USP54-204ENST00000422491 SH2D7A6NKC9 451 aaPredicted RBP8.76□□□□□ -1.01
USP54-204ENST00000422491 IQCF6A8MYZ5 107 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 SYS1-DBNDD2H3BUS1 97 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 SPINT2O43291 252 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 SRFP11831 508 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 PSG9Q00887 426 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 RTL8BQ17RB0 113 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 TBC1D28Q2M2D7 210 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 SPINK14Q6IE38 97 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 SLC25A34Q6PIV7 304 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 C12orf54Q6X4T0 127 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 OR2T6Q8NHC8 308 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 SNRNP40Q96DI7 357 aaKnown RBP8.76□□□□□ -1.01
USP54-204ENST00000422491 GRAMD2BQ96HH9 432 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 TRIB1Q96RU8 372 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 TMEM14BQ9NUH8 114 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 BOKQ9UMX3 212 aaPredicted RBP8.76□□□□□ -1.01
USP54-204ENST00000422491 A0A1B0GXF2 115 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 GAGE12BA1L429 117 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 VWC2LB2RUY7 222 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 PRR27Q6MZM9 219 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 FAM71F2Q6NXP2 309 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 NCOR1P1Q9H4R4 102 aa8.76□□□□□ -1.01
USP54-204ENST00000422491 FOXA2Q9Y261 457 aaPredicted RBP8.76□□□□□ -1.01
USP54-204ENST00000422491 S100A7P31151 101 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 TAS2R45P59539 299 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 HSPE1P61604 102 aaKnown RBP8.75□□□□□ -1.01
USP54-204ENST00000422491 VWA1Q6PCB0 445 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 LINC00173Q6ZV60 143 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 MOB3BQ86TA1 216 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms