RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 HIST1H2BJP06899 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 RD3LP0DJH9 198 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 GZMBP10144 247 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 PTHLHP12272 177 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 RPS4Y1P22090 263 aaKnown RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BOP23527 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 PSMB5P28074 263 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HSD11B1P28845 292 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BBP33778 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 GPR4P46093 362 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 OR1E2P47887 323 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BDP58876 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TAS2R20P59543 309 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BCP62807 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 RBX1P62877 108 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 AKR1C1Q04828 323 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 ZNF616Q08AN1 781 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 ADIGQ0VDE8 80 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 ZNF235Q14590 738 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 CDK5R1Q15078 307 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 EBPQ15125 230 aaKnown RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 ELOCQ15369 112 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST2H2BEQ16778 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 LCE3AQ5TA76 89 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 ZNF880Q6PDB4 577 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 DPPA3Q6W0C5 159 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 ZNF705AQ6ZN79 300 aaPredicted RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 TMED4Q7Z7H5 227 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 CA13Q8N1Q1 262 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 NECAP1Q8NC96 275 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 OR13G1Q8NGZ3 307 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BHQ93079 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 MUCL1Q96DR8 90 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 C18orf15Q96N68 181 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TP53RKQ96S44 253 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BNQ99877 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BMQ99879 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 HIST1H2BLQ99880 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 SUCNR1Q9BXA5 334 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 SNHG12Q9BXW3 62 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 PCBD2Q9H0N5 130 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 PRO1933Q9H354 126 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 TCEAL2Q9H3H9 227 aaPredicted RBP2.76□□□□□ -1.97
VPS54-204ENST00000416400 BCL2L10Q9HD36 194 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 FKBP11Q9NYL4 201 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 BET1LQ9NYM9 111 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 C21orf62Q9NYP8 219 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 PPIL1Q9Y3C6 166 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 DOCK2Q92608 1830 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 COL24A1Q17RW2 1714 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 NUP188Q5SRE5 1749 aa2.76□□□□□ -1.97
VPS54-204ENST00000416400 CACNA1SQ13698 1873 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 NRXN3Q9Y4C0 1643 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 AFDNP55196 1824 aaKnown RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 ARID1AO14497 2285 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 RGPD8O14715 1765 aaPredicted RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 ANKRD36CQ5JPF3 1778 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 RGPD5Q99666 1765 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 C2orf16Q68DN1 1984 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 TRAV30A0A087WSZ9 112 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 FAM240AA0A1B0GVK7 77 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 TMEM150BA6NC51 233 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 J3QLW9 94 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 M0R1B8 84 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 RRP8O43159 456 aaKnown RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 CYB5BO43169 146 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 SOX14O95416 240 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 IGLV2-8P01709 118 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 HLA-AP01891 365 aaKnown RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 PRH1P02810 166 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 IL4P05112 153 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 TRGC1P0CF51 173 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 ZNF286BP0CG31 522 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 CXCL8P10145 99 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 CCL2P13500 99 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 CDK2P24941 298 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 IMPA1P29218 277 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 BRS3P32247 399 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 PYCR1P32322 319 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 PSMB2P49721 201 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 TAS2R41P59536 307 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 BTN3A2P78410 334 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 HLA-DRB3P79483 266 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 ZNF816Q0VGE8 651 aaPredicted RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 DHRS2Q13268 280 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 SHHQ15465 462 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 PSG3Q16557 428 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 TMEM128Q5BJH2 165 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 FKBP1CQ5VVH2 108 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 SBSNQ6UWP8 590 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 CLEC20AQ6ZU45 233 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 GLT6D1Q7Z4J2 308 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 H1FOOQ8IZA3 346 aaPredicted RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 ZNF615Q8N8J6 731 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 SLC26A10Q8NG04 563 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 OR4S1Q8NGB4 309 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 OR6K2Q8NGY2 324 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 OR1P1Q8NH06 330 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 NT5CQ8TCD5 201 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms