RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 STHQ8IWL8 128 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 PEMTQ9UBM1 199 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 TANC2Q9HCD6 1990 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 IMMP2LQ96T52 175 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 DLEC1Q9Y238 1755 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 SERF1AO75920 110 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 PPBPP02775 128 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 ZG16O60844 167 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 NBEAP1P0C6P0 100 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 LOC105371242A0A075B767 164 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 MYF5P13349 255 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 SMPXQ9UHP9 88 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 MUC21A0A0G2JKD1 596 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 MUC21A0A140T8X8 626 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 TMEM8BA6NDV4 472 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 MUC21Q5SSG8 566 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 IGHV3-66A0A0C4DH42 116 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 POU2AF1Q16633 256 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 TRIP6Q15654 476 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 TMEM167AQ8TBQ9 72 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 PEAR1Q5VY43 1037 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 RASL10BQ96S79 203 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 TNCP24821 2201 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 TRGV4A0A0C4DH28 118 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 C3AR1Q16581 482 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 TMEM186Q96B77 213 aa11.38□□□□□ -0.59
CCDC88A-204ENST00000413716 PROB1E7EW31 1015 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 PTGDSP41222 190 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 RBM38Q9H0Z9 239 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 MED13LQ71F56 2210 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 SCO2A0A1W2PP80 73 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A10PA6NDY2 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A18PA6NE21 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A16PA6NEW6 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A20PA6NIJ5 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A8PA6NJQ4 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A7PA6NKC0 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A22PA8MWA6 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A12PA8MX19 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A5PA8MXJ8 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A23PA8MXZ1 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A15PP0C7V4 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A13PP0C7W8 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A14PP0C7W9 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A24PP0C7X0 464 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 AQP3Q92482 292 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 Q9H3A6 140 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 PLXNB1O43157 2135 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 CLPSL1A2RUU4 121 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 PLA2G10O15496 165 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 FSTP19883 344 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 DEFB123Q8N688 67 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 LHX9Q9NQ69 397 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 PSCAO43653 123 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 IFITM1P13164 125 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 UCP2P55851 309 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 PPIAL4CA0A0B4J2A2 164 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 PPIAL4GP0DN37 164 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 LIFP15018 202 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 MYOD1P15172 320 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 NHLRC3Q5JS37 347 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 SNHG12Q9BXW3 62 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 ATP5L2Q7Z4Y8 100 aa11.37□□□□□ -0.59
CCDC88A-204ENST00000413716 CGAP01215 116 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 ISXQ2M1V0 245 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 CHAC1Q9BUX1 264 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 A0A0G2JMM0 328 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 A0A1W2PPB8 328 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 KIR3DP1A8MWS1 328 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 HAPLN4Q86UW8 402 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 TCF19Q9Y242 345 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 EGR2P11161 476 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 C5orf47Q569G3 176 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 CBLN3Q6UW01 205 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 MLNRO43193 412 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 TPRX1Q8N7U7 411 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 ATXN7O15265 892 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 PMVKQ15126 192 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 ABHD12Q8N2K0 398 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 CHCHD5Q9BSY4 110 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 IGLV3-27P01718 113 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 GFI1BQ5VTD9 330 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 VEGFBP49765 207 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 EFNB1P98172 346 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 NCOR1P1Q9H4R4 102 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 PLXND1Q9Y4D7 1925 aa11.36□□□□□ -0.59
CCDC88A-204ENST00000413716 FAM90A2PQ658T7 463 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 C1orf43Q9BWL3 253 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 EGR4Q05215 589 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 RCC1LQ96I51 464 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 GNB1LQ9BYB4 327 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 TRAV8-3A0A0A6YYJ7 113 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 CXorf51AA0A1B0GTR3 108 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 SELLP14151 372 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 HOXB1P14653 301 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 FOXA2Q9Y261 457 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 IGHV3-48P01763 117 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 EVI2AP22794 236 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 TGIF1Q15583 401 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 OR9G1Q8NH87 305 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms