RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZNF253O75346 499 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 SAA2P0DJI9 122 aaPredicted RBP17.2■□□□□ 0.34
CTCF-202ENST00000401394 SMIM21Q3B7S5 101 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 ZZEF1O43149 2961 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 TCF21O43680 179 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 SPATA45Q537H7 98 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 LYG1Q8N1E2 194 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 C20orf144Q9BQM9 153 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 SRRM4A7MD48 611 aaKnown RBP17.19■□□□□ 0.34
CTCF-202ENST00000401394 ACP1P24666 158 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 SSBP4Q9BWG4 385 aaPredicted RBP17.19■□□□□ 0.34
CTCF-202ENST00000401394 DCAF16Q9NXF7 216 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 TMEM136Q6ZRR5 245 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 NABP2Q9BQ15 211 aa17.19■□□□□ 0.34
CTCF-202ENST00000401394 KLF13Q9Y2Y9 288 aaPredicted RBP17.19■□□□□ 0.34
CTCF-202ENST00000401394 SPTBN2O15020 2390 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 BMPR1BO00238 502 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 PLAUP00749 431 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 RHOBP62745 196 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 SLAQ13239 276 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 MOGAT3Q86VF5 341 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 GCSAMQ8N6F7 178 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 C9orf106Q8NAJ2 232 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 OPN3Q9H1Y3 402 aaPredicted RBP17.18■□□□□ 0.34
CTCF-202ENST00000401394 SPRY3O43610 288 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 C11orf42Q8N5U0 333 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 TUBG2Q9NRH3 451 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 DYSFO75923 2080 aa17.18■□□□□ 0.34
CTCF-202ENST00000401394 WT1P19544 449 aaPredicted RBP17.17■□□□□ 0.34
CTCF-202ENST00000401394 PAFAH1B2P68402 229 aa17.17■□□□□ 0.34
CTCF-202ENST00000401394 RBM14Q96PK6 669 aaKnown RBP17.17■□□□□ 0.34
CTCF-202ENST00000401394 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.17■□□□□ 0.34
CTCF-202ENST00000401394 MRPS11P82912 194 aaKnown RBP17.17■□□□□ 0.34
CTCF-202ENST00000401394 DEFB123Q8N688 67 aa17.17■□□□□ 0.34
CTCF-202ENST00000401394 COL27A1Q8IZC6 1860 aaPredicted RBP17.17■□□□□ 0.34
CTCF-202ENST00000401394 C3orf79P0CE67 100 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 PRR27Q6MZM9 219 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 SFXN3Q9BWM7 321 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 IDI2-AS1Q9NZ38 188 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 LNP1A1A4G5 178 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 M0QZ24 198 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 TNFSF15O95150 251 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 IGLV2-8P01709 118 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 PYYP10082 97 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 KIR2DL2P43627 348 aaPredicted RBP17.16■□□□□ 0.34
CTCF-202ENST00000401394 RAB7AP51149 207 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 RANP62826 216 aaKnown RBP17.16■□□□□ 0.34
CTCF-202ENST00000401394 OR2T6Q8NHC8 308 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 TRGV10A0A0A0MS01 117 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 C15orf61A6NNL5 157 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 E7EUB6 86 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 SIAH2O43255 324 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 MPDU1O75352 247 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 NDUFB8O95169 186 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 PMCHL1Q16048 86 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 NIT1Q86X76 327 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 KIR3DL3Q8N743 410 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 STARD4Q96DR4 205 aa17.16■□□□□ 0.34
CTCF-202ENST00000401394 GMPPAQ96IJ6 420 aaPredicted RBP17.16■□□□□ 0.34
CTCF-202ENST00000401394 SH2D7A6NKC9 451 aaPredicted RBP17.15■□□□□ 0.34
CTCF-202ENST00000401394 A8MXE2 369 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 PRR20EP86478 221 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 PRR20CP86479 221 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 PRR20DP86480 221 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 PRR20BP86481 221 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 PRR20AP86496 221 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 GDF5OSQ5U4N7 250 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 CDC42EP3Q9UKI2 254 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 ADH4P08319 380 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 DDB2Q92466 427 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 ZNF355PQ9NSJ1 428 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 CALYQ9NYX4 217 aa17.15■□□□□ 0.34
CTCF-202ENST00000401394 PIEZO2Q9H5I5 2752 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 IGHV1-18A0A0C4DH31 117 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 IGKV3-15P01624 115 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 CHRNB4P30926 498 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 HINT1P49773 126 aaPredicted RBP17.14■□□□□ 0.33
CTCF-202ENST00000401394 TMPRSS3P57727 454 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 TMEM249Q2WGJ8 235 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 Q6ZN92 141 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 Q6ZT83 130 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 PRR7Q8TB68 274 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 ST6GALNAC6Q969X2 333 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 OR2V2Q96R30 315 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 DNAJC4Q9NNZ3 241 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 CORTO00230 105 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 HYPMO75409 117 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 REG1BP48304 166 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 C17orf58Q2M2W7 97 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 OR51B2Q9Y5P1 312 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 CACNA1HO95180 2353 aa17.14■□□□□ 0.33
CTCF-202ENST00000401394 IGHV2OR16-5A0A0B4J2B6 119 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 RPP30P78346 268 aaKnown RBP17.13■□□□□ 0.33
CTCF-202ENST00000401394 CX3CL1P78423 397 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 HOXC12P31275 282 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 CCL11P51671 97 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 TXN2Q99757 166 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 ZNF586Q9NXT0 402 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 TECRQ9NZ01 308 aaKnown RBP17.13■□□□□ 0.33
CTCF-202ENST00000401394 H3BTX0 84 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms