RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 LINC00312Q9Y6C7 94 aa15.37■□□□□ 0.05
USP48-204ENST00000400301 TRAV34A0A0B4J273 112 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 IGHV1-46P01743 117 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 MT-ND6P03923 174 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 BRS3P32247 399 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 SGK494Q96LW2 274 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 ZMAT5Q9UDW3 170 aaKnown RBP15.36■□□□□ 0.05
USP48-204ENST00000400301 NDFIP1Q9BT67 221 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 M0R143 59 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 UPK2O00526 184 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 SAA1P0DJI8 122 aaPredicted RBP15.36■□□□□ 0.05
USP48-204ENST00000400301 HNRNPA3P51991 378 aaKnown RBP15.36■□□□□ 0.05
USP48-204ENST00000400301 ZNF596Q8TC21 504 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 FAM222BQ8WU58 562 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 GGTLC1Q9BX51 225 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 ELOVL5Q9NYP7 299 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 THYN1Q9P016 225 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 HILPDAQ9Y5L2 63 aa15.36■□□□□ 0.05
USP48-204ENST00000400301 IGHV1-69-2A0A0G2JMI3 117 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 PAFAH1B2P68402 229 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 TMEM144Q7Z5S9 345 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 HTR1DP28221 377 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 FAM122AQ96E09 287 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 NAGKQ9UJ70 344 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 TDGF1P13385 188 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 LMO1P25800 156 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 ARL3P36405 182 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 Q6ZR03 302 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 HIGD1AQ9Y241 93 aa15.35■□□□□ 0.05
USP48-204ENST00000400301 C15orf62A8K5M9 175 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 H3BTX0 84 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 M0R2Z0 102 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 SLC31A2O15432 143 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 LYPD6BQ8NI32 183 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 IMMP2LQ96T52 175 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 EML6Q6ZMW3 1958 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 MOSP00540 346 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 CRIP3Q6Q6R5 217 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 OR52E5Q8NH55 327 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 FAM90A9PA6NNJ1 464 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 RPL11P62913 178 aaKnown RBP15.34■□□□□ 0.05
USP48-204ENST00000400301 MEF2CQ06413 473 aaPredicted RBP15.34■□□□□ 0.05
USP48-204ENST00000400301 EFNB3Q15768 340 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 ZNF785A8K8V0 405 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 LGALS7P47929 136 aa15.34■□□□□ 0.05
USP48-204ENST00000400301 SSBP3Q9BWW4 388 aaPredicted RBP15.34■□□□□ 0.05
USP48-204ENST00000400301 CSN3P07498 182 aa15.33■□□□□ 0.05
USP48-204ENST00000400301 PLA2G2CQ5R387 149 aa15.33■□□□□ 0.05
USP48-204ENST00000400301 ADAMTS9Q9P2N4 1935 aa15.33■□□□□ 0.04
USP48-204ENST00000400301 MRPL32Q9BYC8 188 aaKnown RBP15.33■□□□□ 0.04
USP48-204ENST00000400301 INTS1Q8N201 2190 aaKnown RBP15.33■□□□□ 0.04
USP48-204ENST00000400301 ZNF137PP52743 207 aa15.33■□□□□ 0.04
USP48-204ENST00000400301 FA2HQ7L5A8 372 aa15.33■□□□□ 0.04
USP48-204ENST00000400301 RPUSD1Q9UJJ7 312 aaKnown RBP15.33■□□□□ 0.04
USP48-204ENST00000400301 IL36BQ9NZH7 164 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 PPIAL4CA0A0B4J2A2 164 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 HLA-DQA1P01909 254 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 PPIAL4GP0DN37 164 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 ZNF474Q6S9Z5 364 aaPredicted RBP15.32■□□□□ 0.04
USP48-204ENST00000400301 MBD3L4A6NDZ8 208 aaPredicted RBP15.32■□□□□ 0.04
USP48-204ENST00000400301 MBD3L3A6NE82 208 aaPredicted RBP15.32■□□□□ 0.04
USP48-204ENST00000400301 MBD3L5A6NJ08 208 aaPredicted RBP15.32■□□□□ 0.04
USP48-204ENST00000400301 DIRC3C9JPN6 131 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 CORTO00230 105 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 SOD3P08294 240 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 HIST3H2BBQ8N257 126 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 MBD3L2Q8NHZ7 208 aaPredicted RBP15.32■□□□□ 0.04
USP48-204ENST00000400301 OCC1Q8TAD7 63 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 DERL1Q9BUN8 251 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 C5orf42Q9H799 3197 aa15.32■□□□□ 0.04
USP48-204ENST00000400301 ISLRO14498 428 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 LINC01560Q8TB33 94 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 TMEM170AQ8WVE7 144 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 RALYQ9UKM9 306 aaKnown RBP15.31■□□□□ 0.04
USP48-204ENST00000400301 LRP4O75096 1905 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 STAG3L2P0CL84 134 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 STAG3L3P0CL85 134 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 RELBQ01201 579 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 TCF23Q7RTU1 214 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 HAPLN4Q86UW8 402 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 MKI67P46013 3256 aaKnown RBP15.31■□□□□ 0.04
USP48-204ENST00000400301 TIMP3P35625 211 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 ZNF726P1Q15940 193 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 GFRA3O60609 400 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 SRIP30626 198 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 PRCDQ00LT1 54 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 RNF24Q9Y225 148 aa15.31■□□□□ 0.04
USP48-204ENST00000400301 ZGRF1Q86YA3 2104 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 A8MWL6 223 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 MYOD1P15172 320 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 ARF6P62330 175 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 AARDQ4LEZ3 155 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 PRNTQ86SH4 94 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 MGST2Q99735 147 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 HIST1H2BLQ99880 126 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 PPP1R14DQ9NXH3 145 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 LINC00305Q7Z4B0 112 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 MUC15Q8N387 334 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 CACNG8Q8WXS5 425 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 CLEC7AQ9BXN2 247 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms