RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 AKIP1Q9NQ31 210 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 BIRC6Q9NR09 4857 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 C15orf61A6NNL5 157 aa21.64■■□□□ 1.05
HMGB1-205ENST00000399494 RBMXL2O75526 392 aaKnown RBP21.64■■□□□ 1.05
HMGB1-205ENST00000399494 OR5AC1P0C628 307 aa21.64■■□□□ 1.05
HMGB1-205ENST00000399494 ATP5G2Q06055 141 aa21.64■■□□□ 1.05
HMGB1-205ENST00000399494 ZNF343Q6P1L6 599 aa21.64■■□□□ 1.05
HMGB1-205ENST00000399494 NECAP1Q8NC96 275 aa21.64■■□□□ 1.05
HMGB1-205ENST00000399494 RNASE11Q8TAA1 199 aaKnown RBP21.64■■□□□ 1.05
HMGB1-205ENST00000399494 PEF1Q9UBV8 284 aaKnown RBP21.64■■□□□ 1.05
HMGB1-205ENST00000399494 TRBV9A0A0B4J1U6 114 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 OR2J3O76001 311 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 CRYGCP07315 174 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 CSN3P07498 182 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 CTRB1P17538 263 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 UCP1P25874 307 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 CTRB2Q6GPI1 263 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 C19orf35Q6ZS72 473 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 OR10W1Q8NGF6 305 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 SIGLEC8Q9NYZ4 499 aa21.63■■□□□ 1.05
HMGB1-205ENST00000399494 IGLC7A0M8Q6 106 aa21.62■■□□□ 1.05
HMGB1-205ENST00000399494 CRYM-AS1A6NIL9 109 aa21.62■■□□□ 1.05
HMGB1-205ENST00000399494 MECP2P51608 486 aaKnown RBP21.62■■□□□ 1.05
HMGB1-205ENST00000399494 EXOSC2Q13868 293 aaKnown RBP21.62■■□□□ 1.05
HMGB1-205ENST00000399494 HSD17B13Q7Z5P4 300 aaPredicted RBP21.62■■□□□ 1.05
HMGB1-205ENST00000399494 OR5B3Q8NH48 314 aa21.62■■□□□ 1.05
HMGB1-205ENST00000399494 TMEM222Q9H0R3 208 aa21.62■■□□□ 1.05
HMGB1-205ENST00000399494 TMEM14BQ9NUH8 114 aa21.62■■□□□ 1.05
HMGB1-205ENST00000399494 TRBV12-3P01733 135 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 HIST1H1BP16401 226 aaKnown RBP21.61■■□□□ 1.05
HMGB1-205ENST00000399494 DHODHQ02127 395 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 BAK1Q16611 211 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 LSM10Q969L4 123 aaKnown RBP21.61■■□□□ 1.05
HMGB1-205ENST00000399494 RRNAD1Q96FB5 475 aaKnown RBP21.61■■□□□ 1.05
HMGB1-205ENST00000399494 TMEM56Q96MV1 263 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 TUBA4BQ9H853 241 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 NDUFA4L2Q9NRX3 87 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 FBXL7Q9UJT9 491 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 KCNIP3Q9Y2W7 256 aa21.61■■□□□ 1.05
HMGB1-205ENST00000399494 IZUMO1RA6ND01 250 aa21.6■■□□□ 1.05
HMGB1-205ENST00000399494 A6NHS1 94 aa21.6■■□□□ 1.05
HMGB1-205ENST00000399494 OR13C7P0DN81 318 aa21.6■■□□□ 1.05
HMGB1-205ENST00000399494 AKR1C4P17516 323 aa21.6■■□□□ 1.05
HMGB1-205ENST00000399494 TATDN3Q17R31 274 aa21.6■■□□□ 1.05
HMGB1-205ENST00000399494 C15orf32Q32M92 178 aa21.6■■□□□ 1.05
HMGB1-205ENST00000399494 CYB5BO43169 146 aa21.59■■□□□ 1.05
HMGB1-205ENST00000399494 IGKV1-5P01602 117 aa21.59■■□□□ 1.05
HMGB1-205ENST00000399494 LCN12Q6JVE5 192 aa21.59■■□□□ 1.05
HMGB1-205ENST00000399494 GTSCR1Q86UQ5 136 aa21.59■■□□□ 1.05
HMGB1-205ENST00000399494 GLYATL2Q8WU03 294 aa21.59■■□□□ 1.05
HMGB1-205ENST00000399494 DBX1A6NMT0 343 aa21.58■■□□□ 1.05
HMGB1-205ENST00000399494 IZUMO4Q1ZYL8 232 aa21.58■■□□□ 1.05
HMGB1-205ENST00000399494 CNPY1Q3B7I2 92 aa21.58■■□□□ 1.05
HMGB1-205ENST00000399494 TMED4Q7Z7H5 227 aa21.58■■□□□ 1.05
HMGB1-205ENST00000399494 CDS2O95674 445 aa21.57■■□□□ 1.04
HMGB1-205ENST00000399494 WT1-ASQ06250 92 aa21.57■■□□□ 1.04
HMGB1-205ENST00000399494 RBPMSQ93062 196 aaKnown RBP21.57■■□□□ 1.04
HMGB1-205ENST00000399494 TMEM230Q96A57 120 aa21.57■■□□□ 1.04
HMGB1-205ENST00000399494 FANCD2OSQ96PS1 177 aa21.57■■□□□ 1.04
HMGB1-205ENST00000399494 SDHCQ99643 169 aaPredicted RBP21.57■■□□□ 1.04
HMGB1-205ENST00000399494 SLC25A21Q9BQT8 299 aaPredicted RBP21.57■■□□□ 1.04
HMGB1-205ENST00000399494 THYN1Q9P016 225 aa21.57■■□□□ 1.04
HMGB1-205ENST00000399494 LINC00854A0A1B0GVQ3 168 aa21.56■■□□□ 1.04
HMGB1-205ENST00000399494 RPEL1Q2QD12 228 aa21.56■■□□□ 1.04
HMGB1-205ENST00000399494 FAM209BQ5JX69 171 aa21.56■■□□□ 1.04
HMGB1-205ENST00000399494 TMEM268Q5VZI3 342 aa21.56■■□□□ 1.04
HMGB1-205ENST00000399494 LINC00322Q6ZN03 302 aaPredicted RBP21.56■■□□□ 1.04
HMGB1-205ENST00000399494 PDCD10Q9BUL8 212 aa21.56■■□□□ 1.04
HMGB1-205ENST00000399494 IGLV11-55A0A075B6I3 123 aa21.55■■□□□ 1.04
HMGB1-205ENST00000399494 NAP1L6A6NFF2 107 aa21.55■■□□□ 1.04
HMGB1-205ENST00000399494 CENPXA8MT69 81 aa21.55■■□□□ 1.04
HMGB1-205ENST00000399494 NDUFB8O95169 186 aa21.55■■□□□ 1.04
HMGB1-205ENST00000399494 ANXA3P12429 323 aa21.55■■□□□ 1.04
HMGB1-205ENST00000399494 HSPE1P61604 102 aaKnown RBP21.55■■□□□ 1.04
HMGB1-205ENST00000399494 GALNT14Q96FL9 552 aa21.55■■□□□ 1.04
HMGB1-205ENST00000399494 P0C879 139 aa21.54■■□□□ 1.04
HMGB1-205ENST00000399494 IL7P13232 177 aa21.54■■□□□ 1.04
HMGB1-205ENST00000399494 PRCDQ00LT1 54 aa21.54■■□□□ 1.04
HMGB1-205ENST00000399494 RBMS2Q15434 407 aaKnown RBP21.54■■□□□ 1.04
HMGB1-205ENST00000399494 FAM219AQ8IW50 185 aa21.54■■□□□ 1.04
HMGB1-205ENST00000399494 SELENOHQ8IZQ5 122 aaKnown RBP21.54■■□□□ 1.04
HMGB1-205ENST00000399494 LHFPL5Q8TAF8 219 aa21.54■■□□□ 1.04
HMGB1-205ENST00000399494 EEF1AKMT3Q96AZ1 226 aa21.54■■□□□ 1.04
HMGB1-205ENST00000399494 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP21.53■■□□□ 1.04
HMGB1-205ENST00000399494 IFNA17P01571 189 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 SLC25A24Q6NUK1 477 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 SLC35G3Q8N808 338 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 OR2K2Q8NGT1 345 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 CXorf58Q96LI9 332 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 HIPK2Q9H2X6 1198 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 PLEKHA3Q9HB20 300 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 RETNQ9HD89 108 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 BATF3Q9NR55 127 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 F11RQ9Y624 299 aaKnown RBP21.53■■□□□ 1.04
HMGB1-205ENST00000399494 S4R3C0 116 aa21.53■■□□□ 1.04
HMGB1-205ENST00000399494 HYDINQ4G0P3 5121 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 A0A0B4J293 547 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 A0A0G2JRQ6 117 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 IGHV3-23P01764 117 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 CCR6P51684 374 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms