RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TRIB3Q96RU7 358 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 NKX6-2Q9C056 277 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 OR2J1Q9GZK6 312 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SNX12Q9UMY4 172 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF706Q9Y5V0 76 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 DYSFO75923 2080 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 WDR90Q96KV7 1748 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 MYH10P35580 1976 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 NHSQ6T4R5 1651 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 TOPAZ1Q8N9V7 1692 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 CARMIL3Q8ND23 1372 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 hCG_1818297A0A087WSY0 165 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 LOC102724200A0A096LPH7 203 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-204ENST00000399489 LOC102725191A0A1B0GVB3 256 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM72A0PK05 275 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 KNCNA6PVL3 124 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 A8MT66 165 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 HLA-DQB2P05538 268 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 OR12D1P0DN82 309 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 NTF3P20783 257 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 TAS2R20P59543 309 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 COPZ1P61923 177 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 PPP1CAP62136 330 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 C12orf74Q32Q52 190 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 HES3Q5TGS1 186 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 CAMK2N1Q7Z7J9 78 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 SLC25A42Q86VD7 318 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 SGPP2Q8IWX5 399 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 H1FOOQ8IZA3 346 aaPredicted RBP2.92□□□□□ -1.94
HMGB1-204ENST00000399489 C11orf42Q8N5U0 333 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 C20orf203Q8NBC4 194 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 OR2T27Q8NH04 317 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 STARD4Q96DR4 205 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 PHYHIPLQ96FC7 376 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 SNHG12Q9BXW3 62 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 OR8D2Q9GZM6 311 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 SND1-IT1Q9HBX3 110 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 DEC1Q9P2X7 70 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 ANAPC10Q9UM13 185 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 MED31Q9Y3C7 131 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 HSPE1-MOB4S4R3N1 261 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 ABCC6O95255 1503 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 C10orf71Q711Q0 1435 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 NAV1Q8NEY1 1877 aa2.92□□□□□ -1.94
HMGB1-204ENST00000399489 MYH3P11055 1940 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 C5orf63A6NC05 138 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 IFITM5A6NNB3 132 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 HLA-DRB1P01911 266 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 GNG4P50150 75 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF140P52738 457 aaPredicted RBP2.91□□□□□ -1.94
HMGB1-204ENST00000399489 GNA12Q03113 381 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 MMDQ15546 238 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 EBLN2Q6P2I7 272 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 PRSS54Q6PEW0 395 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 TCF23Q7RTU1 214 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 EXOC3-AS1Q8N2X6 119 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 KLHL30-AS1Q8NEE0 82 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 OR2M3Q8NG83 312 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 PRADC1Q9BSG0 188 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 THTPAQ9BU02 230 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 GGTLC1Q9BX51 225 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 GTSF1LQ9H1H1 148 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 KCNIP2Q9NS61 270 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 SCN3BQ9NY72 215 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 SLC23A2Q9UGH3 650 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 LAMTOR3Q9UHA4 124 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 V9GYS6 101 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 ARHGEF28Q8N1W1 1705 aaKnown RBP2.91□□□□□ -1.94
HMGB1-204ENST00000399489 SLIT3O75094 1523 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 CACNA1SQ13698 1873 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 PXDNLA1KZ92 1463 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 QSER1Q2KHR3 1735 aa2.91□□□□□ -1.94
HMGB1-204ENST00000399489 TRAV5A0A0B4J249 113 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 A0A1B0GW64 132 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 A0A1W2PPR1 153 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 OR4C45A6NMZ5 311 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 KRTAP16-1A8MUX0 517 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 INS-IGF2F8WCM5 200 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 PIRO00625 290 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF682O95780 498 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 CXorf1O96002 111 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 HSPB1P04792 205 aaKnown RBP2.9□□□□□ -1.94
HMGB1-204ENST00000399489 GYPCP04921 128 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 UCHL1P09936 223 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 PPP1CCP36873 323 aaKnown RBP2.9□□□□□ -1.94
HMGB1-204ENST00000399489 INPP1P49441 399 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 DEFA3P59666 94 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 FABP9Q0Z7S8 132 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM241Q24JQ0 296 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF181Q2M3W8 571 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 CCSMST1Q4G0I0 132 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 LYRM7Q5U5X0 104 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 GTF2H5Q6ZYL4 71 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 OR5H2Q8NGV7 314 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 SLAMF6Q96DU3 332 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 CAMK2N2Q96S95 79 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 FIS1Q9Y3D6 152 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 SMAD5-AS1Q9Y6J3 95 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 COL18A1P39060 1754 aa2.9□□□□□ -1.94
HMGB1-204ENST00000399489 CPSF1Q10570 1443 aaKnown RBP2.9□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms