RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CNTFRP26992 372 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 TIMP4Q99727 224 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 TOMM7Q9P0U1 55 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 IGHV3-66A0A0C4DH42 116 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 ASIPP42127 132 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 TDGF1P3P51864 188 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 ATP5IP56385 69 aaPredicted RBP10.02□□□□□ -0.81
SYNPO-202ENST00000394243 IGKV3D-20A0A0C4DH25 116 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 RBMY1BA6NDE4 496 aaKnown RBP10.02□□□□□ -0.81
SYNPO-202ENST00000394243 RBMY1EA6NEQ0 496 aaKnown RBP10.02□□□□□ -0.81
SYNPO-202ENST00000394243 ZNF815PA8K554 130 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 THY1P04216 161 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 UMODP07911 640 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 RBMY1DP0C7P1 496 aaKnown RBP10.02□□□□□ -0.81
SYNPO-202ENST00000394243 RBMY1A1P0DJD3 496 aaKnown RBP10.02□□□□□ -0.81
SYNPO-202ENST00000394243 RBMY1CP0DJD4 496 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 TMEM249Q2WGJ8 235 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 OSTCQ9NRP0 149 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 TUBGCP6Q96RT7 1819 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 NAPSAO96009 420 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 SPINK8P0C7L1 97 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 C1orf174Q8IYL3 243 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 TMEM256Q8N2U0 113 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 MPDZO75970 2070 aa10.02□□□□□ -0.81
SYNPO-202ENST00000394243 hDV102S1A0JD36 115 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 IGHMP01871 453 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 CELA2AP08217 269 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 MPV17L2Q567V2 206 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 DNM1P46Q6ZS02 220 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 C1orf122Q6ZSJ8 110 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 EREGO14944 169 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 SAA1P0DJI8 122 aaPredicted RBP10.01□□□□□ -0.81
SYNPO-202ENST00000394243 FOXL1Q12952 345 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 RALGAPA1Q6GYQ0 2036 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 A0A1W2PRE2 83 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 C16orf97H3BN30 126 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 IGHV3-23P01764 117 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 CIARTQ8N365 385 aaPredicted RBP10.01□□□□□ -0.81
SYNPO-202ENST00000394243 USP54Q70EL1 1684 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 RAB9AP51151 201 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 KIR3DL3Q8N743 410 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 S4R3C0 116 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 DOCK11Q5JSL3 2073 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 C4orf51C9J302 202 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 HAX1O00165 279 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 SSBP2P81877 361 aaPredicted RBP10.01□□□□□ -0.81
SYNPO-202ENST00000394243 BCL6BQ8N143 479 aaPredicted RBP10.01□□□□□ -0.81
SYNPO-202ENST00000394243 IGHV3-49A0A0A0MS15 119 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 TMEM101Q96IK0 257 aa10.01□□□□□ -0.81
SYNPO-202ENST00000394243 EVI2AP22794 236 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 PLAURQ03405 335 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 TEX38Q6PEX7 206 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 DMRTC2Q8IXT2 367 aaPredicted RBP10□□□□□ -0.81
SYNPO-202ENST00000394243 IFI27L1Q96BM0 104 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 DEPPQ9NTK1 212 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 SLC25A15Q9Y619 301 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 MTCL1Q9Y4B5 1905 aaKnown RBP10□□□□□ -0.81
SYNPO-202ENST00000394243 ATP5G2Q06055 141 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 LCN12Q6JVE5 192 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 C9orf50Q5SZB4 431 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 RSPO3Q9BXY4 272 aaPredicted RBP10□□□□□ -0.81
SYNPO-202ENST00000394243 CHTOPQ9Y3Y2 248 aaKnown RBP10□□□□□ -0.81
SYNPO-202ENST00000394243 EGR4Q05215 589 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 OR9G4Q8NGQ1 327 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 SLC25A2Q9BXI2 301 aa10□□□□□ -0.81
SYNPO-202ENST00000394243 FHL5Q5TD97 284 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 ASCL4Q6XD76 172 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 PLPPR1Q8TBJ4 325 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 KLF14Q8TD94 323 aaPredicted RBP9.99□□□□□ -0.81
SYNPO-202ENST00000394243 RAX2Q96IS3 184 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 ERG28Q9UKR5 140 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 FAM186AA6NE01 2351 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 PILRAQ9UKJ1 303 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 NPIPB11E5RHQ5 1161 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 H7C1H1 209 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 DIRC2Q96SL1 478 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 VSIRQ9H7M9 311 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 IL9P15248 144 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 GUSBP1Q15486 140 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 LHX8Q68G74 356 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 ZNF562Q6V9R5 426 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 OR5P3Q8WZ94 311 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 EPDR1Q9UM22 224 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 FOXA2Q9Y261 457 aaPredicted RBP9.99□□□□□ -0.81
SYNPO-202ENST00000394243 BTAF1O14981 1849 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 TNFRSF6BO95407 300 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 SRSF1Q07955 248 aaKnown RBP eCLIP9.99□□□□□ -0.81
SYNPO-202ENST00000394243 GTSCR1Q86UQ5 136 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 COX11Q9Y6N1 276 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 HIST1H4AP62805 103 aaKnown RBP9.99□□□□□ -0.81
SYNPO-202ENST00000394243 FAM71F2Q6NXP2 309 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 RNF182Q8N6D2 247 aa9.99□□□□□ -0.81
SYNPO-202ENST00000394243 ATXN8Q156A1 80 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 ACTL10Q5JWF8 245 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 LSM4Q9Y4Z0 139 aaKnown RBP9.98□□□□□ -0.81
SYNPO-202ENST00000394243 DOCK1Q14185 1865 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 FAM106AQ4KMX7 169 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 GREM1O60565 184 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 FOXC1Q12948 553 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 ZNF784Q8NCA9 323 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms