RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TRAV34A0A0B4J273 112 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 LRRC30A6NM36 301 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 C9JCJ5 164 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 SLC17A3O00476 420 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 FRMD6-AS1P0C7T7 363 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 GPM6AP51674 278 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 RPEL1Q2QD12 228 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 MRPL21Q7Z2W9 205 aaKnown RBP9.21□□□□□ -0.93
CUX1-204ENST00000393824 S100A7AQ86SG5 101 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 MUC15Q8N387 334 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 ST6GALNAC3Q8NDV1 305 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 TMEM204Q9BSN7 226 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 WNT10AQ9GZT5 417 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 OR1A1Q9P1Q5 309 aa9.21□□□□□ -0.93
CUX1-204ENST00000393824 A0A0G2JNJ9 132 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 A0A1W2PPV4 95 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 K7EN84 100 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 PRB1P04280 392 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 ARR3P36575 388 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 RHOBP62745 196 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 SMIM21Q3B7S5 101 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 LRRC10Q5BKY1 277 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 PRR27Q6MZM9 219 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 TMEM108Q6UXF1 575 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 C22orf34Q6ZV56 151 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 ZBTB34Q8NCN2 500 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 RCHY1Q96PM5 261 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 PKIBQ9C010 78 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.21□□□□□ -0.94
CUX1-204ENST00000393824 CLN8Q9UBY8 286 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 Q9UFV3 132 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 NAT8BQ9UHF3 227 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 WDR83OSQ9Y284 106 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 UTP20O75691 2785 aaKnown RBP9.21□□□□□ -0.94
CUX1-204ENST00000393824 DCHS2Q6V1P9 2916 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 ROS1P08922 2347 aa9.21□□□□□ -0.94
CUX1-204ENST00000393824 ESPL1Q14674 2120 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 TRAV38-1A0A0B4J264 116 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 TRAV24A0A0B4J272 114 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 SCO2A0A1W2PP80 73 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 OR5B21A6NL26 309 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 PRRG2O14669 202 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 STAG3L2P0CL84 134 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 STAG3L3P0CL85 134 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 CCL2P13500 99 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 ZNF16P17020 682 aaPredicted RBP9.2□□□□□ -0.94
CUX1-204ENST00000393824 CX3CL1P78423 397 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 STUMQ69YW2 141 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 ZNF474Q6S9Z5 364 aaPredicted RBP9.2□□□□□ -0.94
CUX1-204ENST00000393824 OR4P4Q8NGL7 312 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 MPC1Q9Y5U8 109 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 V9GYV3 84 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 CA2P00918 260 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 PMCHP20382 165 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 CD1BP29016 333 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 HTD2P86397 168 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 CDSNQ15517 529 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 VAMP3Q15836 100 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 TMEM136Q6ZRR5 245 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 FAM58AQ8N1B3 248 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 IL1F10Q8WWZ1 152 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 C11orf52Q96A22 123 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 BORCS7Q96B45 105 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 GP6Q9HCN6 339 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 LRBAP50851 2863 aa9.2□□□□□ -0.94
CUX1-204ENST00000393824 TRAV9-2A0A087WT02 112 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 TRGV10A0A0A0MS01 117 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 ZG16O60844 167 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 CXorf1O96002 111 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 OR10J4P0C629 311 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 TGFBR3Q03167 851 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 ZNF718Q3SXZ3 478 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 GCSAMLQ5JQS6 135 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 Q6ZT83 130 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 DRAM1Q8N682 238 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 TSKUQ8WUA8 353 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 CLEC7AQ9BXN2 247 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 HES4Q9HCC6 221 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 PLSCR4Q9NRQ2 329 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 TRGV8A0A0C4DH27 118 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 ODAMA1E959 279 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 SIRPB1O00241 398 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 MPDU1O75352 247 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 ARL14EPLP0DKL9 152 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 UQCRFS1P47985 274 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 RPL31P62899 125 aaKnown RBP9.19□□□□□ -0.94
CUX1-204ENST00000393824 GNG3P63215 75 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 IGFBP7Q16270 282 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 OR8I2Q8N0Y5 310 aa9.19□□□□□ -0.94
CUX1-204ENST00000393824 EAF1Q96JC9 268 aaPredicted RBP9.19□□□□□ -0.94
CUX1-204ENST00000393824 RALYQ9UKM9 306 aaKnown RBP9.19□□□□□ -0.94
CUX1-204ENST00000393824 H0YJW9 148 aa9.18□□□□□ -0.94
CUX1-204ENST00000393824 SYNGR1O43759 233 aa9.18□□□□□ -0.94
CUX1-204ENST00000393824 CELA3BP08861 270 aa9.18□□□□□ -0.94
CUX1-204ENST00000393824 RIPPLY3P57055 190 aa9.18□□□□□ -0.94
CUX1-204ENST00000393824 SELENOVP59797 346 aa9.18□□□□□ -0.94
CUX1-204ENST00000393824 CXorf67Q86X51 503 aaPredicted RBP9.18□□□□□ -0.94
CUX1-204ENST00000393824 KCNS2Q9ULS6 477 aa9.18□□□□□ -0.94
CUX1-204ENST00000393824 ANKRD30BLA7E2S9 258 aa9.17□□□□□ -0.94
CUX1-204ENST00000393824 BMPR1BO00238 502 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms