RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TMEM95Q3KNT9 176 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF788Q6ZQV5 615 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 FRZBQ92765 325 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM56Q96MV1 263 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 A0A1W2PPR1 153 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 C22orf46C9J442 243 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 PGLYRP1O75594 196 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-205ENST00000392004 DFFBO76075 338 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 SAA4P35542 130 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 OR5C1Q8NGR4 320 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 HES4Q9HCC6 221 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 SAA2-SAA4A0A096LPE2 208 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 PITX3O75364 302 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 SAA2P0DJI9 122 aaPredicted RBP8.46□□□□□ -1.05
COL6A3-205ENST00000392004 PRB4P10163 310 aaPredicted RBP8.46□□□□□ -1.05
COL6A3-205ENST00000392004 ORM2P19652 201 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 THBS3P49746 956 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 HBG1P69891 147 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 HBG2P69892 147 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF506Q5JVG8 444 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 C10orf55Q5SWW7 151 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 NOL4LQ96MY1 436 aaPredicted RBP8.46□□□□□ -1.05
COL6A3-205ENST00000392004 WASHC3Q9Y3C0 194 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 UBE2L5PA0A1B0GUS4 154 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 CHST1O43916 411 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 PNRC1Q12796 327 aaPredicted RBP8.46□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF146Q15072 292 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 CST9LP1Q5W188 147 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 P2RX4Q99571 388 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 CTSZQ9UBR2 303 aa8.46□□□□□ -1.05
COL6A3-205ENST00000392004 IGHV1-8P0DP01 117 aa8.46□□□□□ -1.06
COL6A3-205ENST00000392004 OR5R1Q8NH85 324 aa8.46□□□□□ -1.06
COL6A3-205ENST00000392004 SSMEM1Q8WWF3 244 aa8.46□□□□□ -1.06
COL6A3-205ENST00000392004 C2orf88Q9BSF0 95 aa8.46□□□□□ -1.06
COL6A3-205ENST00000392004 JPT1Q9UK76 154 aa8.46□□□□□ -1.06
COL6A3-205ENST00000392004 GAB2Q9UQC2 676 aa8.46□□□□□ -1.06
COL6A3-205ENST00000392004 IFNA1P01562 189 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 CLEC3BP05452 202 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 RPL27AP46776 148 aaKnown RBP8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FXYD3Q14802 87 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 CXorf66Q5JRM2 361 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-205ENST00000392004 LINC01356Q8N9X3 169 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 ADTRPQ96IZ2 230 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 YPEL4Q96NS1 127 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 TM2D1Q9BX74 207 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 ARHGAP21Q5T5U3 1957 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 IGHV2-26A0A0B4J1V2 119 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 A0A1W2PN81 502 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 CHRNA7P36544 502 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 ICAM4Q14773 271 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 MORN2Q502X0 79 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 SMR3AQ99954 134 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 PIGBOS1A0A0B4J2F0 54 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 MARCH11A6NNE9 402 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF207O43670 478 aaKnown RBP8.45□□□□□ -1.06
COL6A3-205ENST00000392004 CDS2O95674 445 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 SLC25A16P16260 332 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 DYNLT3P51808 116 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 GUSBP1Q15486 140 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM249Q2WGJ8 235 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF497Q6ZNH5 498 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 RAB24Q969Q5 203 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 TP53RKQ96S44 253 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM140Q9NV12 185 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A10PA6NDY2 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A18PA6NE21 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A16PA6NEW6 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A20PA6NIJ5 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A8PA6NJQ4 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A7PA6NKC0 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A22PA8MWA6 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A12PA8MX19 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A5PA8MXJ8 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A23PA8MXZ1 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 RAMP3O60896 148 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A15PP0C7V4 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A13PP0C7W8 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A14PP0C7W9 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 FAM90A24PP0C7X0 464 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 EFNB3Q15768 340 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 LCN15Q6UWW0 184 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM252Q8N6L7 170 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 KIR3DL3Q8N743 410 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 VSTM2AQ8TAG5 236 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 TAF15Q92804 592 aaKnown RBP eCLIP8.45□□□□□ -1.06
COL6A3-205ENST00000392004 C18orf12Q96KH6 178 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 HIST1H2BLQ99880 126 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 OR51B2Q9Y5P1 312 aa8.45□□□□□ -1.06
COL6A3-205ENST00000392004 IGSF23A1L1A6 192 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 GNG7O60262 68 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 VDAC1P21796 283 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 SPSB3Q6PJ21 355 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 LRTM2Q8N967 370 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 RFNGQ9Y644 331 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 MDFIC2A0A1B0GVS7 189 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 MDKP21741 143 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-205ENST00000392004 DSCR9P59020 149 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 RPL8P62917 257 aaKnown RBP8.44□□□□□ -1.06
COL6A3-205ENST00000392004 FBXL19-AS1Q494R0 122 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 KLF17Q5JT82 389 aaPredicted RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms