RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OR4X2Q8NGF9 303 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 IL36BQ9NZH7 164 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 TRAV21A0A0B4J279 112 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 OR10J3Q5JRS4 329 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 SDF2L1Q9HCN8 221 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 CD55P08174 381 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 NHLRC3Q5JS37 347 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 FER1L6-AS1Q8NA97 138 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 RPP21Q9H633 154 aaKnown RBP11.53□□□□□ -0.56
COL4A1-201ENST00000375820 TMEM50AO95807 157 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 LDLRAD2Q5SZI1 272 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 AICDAQ9GZX7 198 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 ELOVL5Q9NYP7 299 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 CHCHD2Q9Y6H1 151 aaPredicted RBP11.53□□□□□ -0.56
COL4A1-201ENST00000375820 IGHV2OR16-5A0A0B4J2B6 119 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 TTC9CQ8N5M4 171 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 TMEM42Q69YG0 159 aa11.53□□□□□ -0.56
COL4A1-201ENST00000375820 HIGD1CA8MV81 97 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 TMEM250H0YL14 139 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 LY75O60449 1722 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 QSER1Q2KHR3 1735 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 H7C1H1 209 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 C1QTNF12Q5T7M4 302 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 GATAD1Q8WUU5 269 aa11.52□□□□□ -0.56
COL4A1-201ENST00000375820 FNDC4Q9H6D8 234 aaPredicted RBP11.52□□□□□ -0.56
COL4A1-201ENST00000375820 PEF1Q9UBV8 284 aaKnown RBP11.52□□□□□ -0.56
COL4A1-201ENST00000375820 SHISA3A0PJX4 238 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 TBX6O95947 436 aaPredicted RBP11.52□□□□□ -0.57
COL4A1-201ENST00000375820 C1orf162Q8NEQ5 155 aaPredicted RBP11.52□□□□□ -0.57
COL4A1-201ENST00000375820 GP6Q9HCN6 339 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 TRBV9A0A0B4J1U6 114 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 TRAV2A0A0B4J234 112 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 IGHMP01871 453 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 VDAC2P45880 294 aaPredicted RBP11.52□□□□□ -0.57
COL4A1-201ENST00000375820 LY6DQ14210 128 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 PAPPA-AS1Q5QFB9 102 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 LOXL4Q96JB6 756 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 A0A087WV48 116 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 A0A1B0GUT8 65 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 H3BRM9 83 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 SMIM10L1P0DMW3 83 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 FAM89BQ8N5H3 189 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 TEX29Q8N6K0 151 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 WDYHV1Q96HA8 205 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 SMIM10Q96HG1 83 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 SDHCQ99643 169 aaPredicted RBP11.52□□□□□ -0.57
COL4A1-201ENST00000375820 VKORC1Q9BQB6 163 aa11.52□□□□□ -0.57
COL4A1-201ENST00000375820 RAMP3O60896 148 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 PYYP10082 97 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 PSG7Q13046 419 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RIPPLY2Q5TAB7 128 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 SPCS1Q9Y6A9 102 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 PGPEP1LA6NFU8 196 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 H3BUT2 72 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 EIF4EBP2Q13542 120 aaPredicted RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 TIMM23BQ5SRD1 257 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 LINC00518Q8N0U6 118 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 DEPPQ9NTK1 212 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 SAA2-SAA4A0A096LPE2 208 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 GREM1O60565 184 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 UMODP07911 640 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 SAA2P0DJI9 122 aaPredicted RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 ZXDCQ2QGD7 858 aaPredicted RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 C9orf106Q8NAJ2 232 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RTBDNQ9BSG5 229 aaPredicted RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 C19orf24Q9BVV8 132 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 TRAV8-2A0A0B4J237 113 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RBMY1BA6NDE4 496 aaKnown RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RBMY1EA6NEQ0 496 aaKnown RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RBMY1DP0C7P1 496 aaKnown RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RBMY1A1P0DJD3 496 aaKnown RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 RBMY1CP0DJD4 496 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 GLRXP35754 106 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 GPX4P36969 197 aaPredicted RBP11.51□□□□□ -0.57
COL4A1-201ENST00000375820 EFNB1P98172 346 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 FMC1Q96HJ9 113 aa11.51□□□□□ -0.57
COL4A1-201ENST00000375820 KBTBD11-OT1A0A1B0GTJ5 212 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 ADMP35318 185 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 PLPPR1Q8TBJ4 325 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 TGFBR3LH3BV60 316 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 COX5BP10606 129 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 PAX2Q02962 417 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 FXYD7P58549 80 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.5□□□□□ -0.57
COL4A1-201ENST00000375820 CD200R1LQ6Q8B3 271 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 LRTM2Q8N967 370 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 CTHRC1Q96CG8 243 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 A0A0G2JK05 382 aa11.5□□□□□ -0.57
COL4A1-201ENST00000375820 ARHGEF17Q96PE2 2063 aaPredicted RBP11.49□□□□□ -0.57
COL4A1-201ENST00000375820 NHP2Q9NX24 153 aaKnown RBP11.49□□□□□ -0.57
COL4A1-201ENST00000375820 DMRT1Q9Y5R6 373 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 ARFGEF1Q9Y6D6 1849 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 HOXB1P14653 301 aaPredicted RBP11.49□□□□□ -0.57
COL4A1-201ENST00000375820 SRSF3P84103 164 aaKnown RBP11.49□□□□□ -0.57
COL4A1-201ENST00000375820 HEATR5BQ9P2D3 2071 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 C1QTNF9P0C862 333 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 DERL1Q9BUN8 251 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 MYOFQ9NZM1 2061 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 A0A0G2JLM5 398 aa11.49□□□□□ -0.57
COL4A1-201ENST00000375820 UCP3P55916 312 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms