RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 RBKSQ9H477 322 aa11.68□□□□□ -0.54
HMGA1-203ENST00000374116 NCOR1P1Q9H4R4 102 aa11.68□□□□□ -0.54
HMGA1-203ENST00000374116 JPT1Q9UK76 154 aa11.68□□□□□ -0.54
HMGA1-203ENST00000374116 ZFP30Q9Y2G7 519 aa11.68□□□□□ -0.54
HMGA1-203ENST00000374116 IGHV3-43A0A0B4J1X8 118 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 LRRC30A6NM36 301 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 C17orf98A8MV24 154 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 RAB29O14966 203 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 SMAD7O15105 426 aaKnown RBP11.67□□□□□ -0.54
HMGA1-203ENST00000374116 S1PR2O95136 353 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 HPRT1P00492 218 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 IFNA1P01562 189 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 IGHV3-43DP0DP04 118 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 SRP14P37108 136 aaKnown RBP11.67□□□□□ -0.54
HMGA1-203ENST00000374116 GPR6P46095 362 aaPredicted RBP11.67□□□□□ -0.54
HMGA1-203ENST00000374116 GNG10P50151 68 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 ELLP55199 621 aaPredicted RBP11.67□□□□□ -0.54
HMGA1-203ENST00000374116 BRWD1-AS2P59051 145 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 NCR3LG1Q68D85 454 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 TEX43Q6ZNM6 134 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 RFESDQ8TAC1 157 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 ANAPC16Q96DE5 110 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 OR5B12Q96R08 314 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 OR6C3Q9NZP0 311 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 GNG13Q9P2W3 67 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 PSG11Q9UQ72 335 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 ACANP16112 2415 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 FLNAP21333 2647 aaKnown RBP11.67□□□□□ -0.54
HMGA1-203ENST00000374116 ZANQ9Y493 2812 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 IRF2P14316 349 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 LCN2P80188 198 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 ARL16Q0P5N6 197 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 LRRC75BQ2VPJ9 315 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 SPANXN5Q5MJ07 72 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 TMEM14EPQ6UXP3 125 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 HAPLN4Q86UW8 402 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 PIMREGQ9BSJ6 248 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 DCTN5Q9BTE1 182 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 RNF7Q9UBF6 113 aa11.67□□□□□ -0.54
HMGA1-203ENST00000374116 IGHV4-61A0A0C4DH41 118 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 YPEL1O60688 119 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 KBTBD11O94819 623 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 MDKP21741 143 aaPredicted RBP11.66□□□□□ -0.54
HMGA1-203ENST00000374116 GALR1P47211 349 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 RPL29P47914 159 aaKnown RBP11.66□□□□□ -0.54
HMGA1-203ENST00000374116 CNN1P51911 297 aaKnown RBP11.66□□□□□ -0.54
HMGA1-203ENST00000374116 SERF2P84101 59 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 PRSS57Q6UWY2 283 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 H2BFWTQ7Z2G1 175 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 YPEL2Q96QA6 119 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 AURKAIP1Q9NWT8 199 aaPredicted RBP11.66□□□□□ -0.54
HMGA1-203ENST00000374116 CR1P17927 2039 aa11.66□□□□□ -0.54
HMGA1-203ENST00000374116 LINC00473A8K010 186 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 VWC2LB2RUY7 222 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 H7BYZ3 331 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 F2RL2O00254 374 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 GPR12P47775 334 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 RBX1P62877 108 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 MORN2Q502X0 79 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 COL5A1-AS1Q5SY13 56 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 DMRTA1Q5VZB9 504 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 CIB3Q96Q77 187 aaPredicted RBP11.65□□□□□ -0.54
HMGA1-203ENST00000374116 RAB9BQ9NP90 201 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 GNG12Q9UBI6 72 aa11.65□□□□□ -0.54
HMGA1-203ENST00000374116 ARHGAP32A7KAX9 2087 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 A0A1W2PPQ1 181 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 MAP1LC3B2A6NCE7 125 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM250H0YL14 139 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 SCGB1D1O95968 90 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 CGB3P0DN86 165 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 CGB7P0DN87 165 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 SLC38A11Q08AI6 406 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 ATP6V1FQ16864 119 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 BSXQ3C1V8 233 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 SDSLQ96GA7 329 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 RSG1Q9BU20 258 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 MAP1LC3BQ9GZQ8 125 aa11.65□□□□□ -0.55
HMGA1-203ENST00000374116 WDR61Q9GZS3 305 aaKnown RBP11.65□□□□□ -0.55
HMGA1-203ENST00000374116 PPIAL4EA0A075B759 164 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 PPIAL4DF5H284 164 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 GYPAP02724 150 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 PPIAL4FP0DN26 164 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 DUTP33316 252 aaKnown RBP11.64□□□□□ -0.55
HMGA1-203ENST00000374116 LTC4SQ16873 150 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 STUMQ69YW2 141 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 DUX4L9Q6RFH8 374 aaPredicted RBP11.64□□□□□ -0.55
HMGA1-203ENST00000374116 LYPD2Q6UXB3 125 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF705AQ6ZN79 300 aaPredicted RBP11.64□□□□□ -0.55
HMGA1-203ENST00000374116 ZNRF1Q8ND25 227 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 C22orf15Q8WYQ4 148 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 RAB1CQ92928 201 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 OR4C12Q96R67 309 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF665Q9H7R5 613 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 PPIAL4AQ9Y536 164 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 TIMM9Q9Y5J7 89 aa11.64□□□□□ -0.55
HMGA1-203ENST00000374116 A0A096LNT2 108 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 FAM90A9PA6NNJ1 464 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 ESDP10768 282 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 CDKN1BP46527 198 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 LOXL3P58215 753 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms