RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 VENTXO95231 258 aa10.72□□□□□ -0.69
SQSTM1-201ENST00000360718 IFI27L2Q9H2X8 130 aa10.72□□□□□ -0.69
SQSTM1-201ENST00000360718 GAB2Q9UQC2 676 aa10.72□□□□□ -0.69
SQSTM1-201ENST00000360718 NBPF19A0A087WUL8 3843 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 FAM90A9PA6NNJ1 464 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 HIST1H1BP16401 226 aaKnown RBP10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 ATP5J2P56134 94 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 HNF4GQ14541 408 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 PDZD11Q5EBL8 140 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 HIST2H2BCQ6DN03 193 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 LYG1Q8N1E2 194 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 ZNF439Q8NDP4 499 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 C8orf46Q8TAG6 207 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 SSX3Q99909 188 aa10.71□□□□□ -0.69
SQSTM1-201ENST00000360718 ANKRD17O75179 2603 aaKnown RBP10.71□□□□□ -0.7
SQSTM1-201ENST00000360718 APCP25054 2843 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 PHOX2AO14813 284 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 HMGB3O15347 200 aaKnown RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 SLC31A2O15432 143 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 LIPFP07098 398 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 FABP4P15090 132 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 DLX6P56179 175 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 BRWD1-AS2P59051 145 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 GFI1BQ5VTD9 330 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 SLC25A48Q6ZT89 311 aaKnown RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 OR4X1Q8NH49 305 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 ZDHHC16Q969W1 377 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 WNK2Q9Y3S1 2297 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 LOC105371242A0A075B767 164 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 MARCH11A6NNE9 402 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 M0R1X1 148 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 MPDU1O75352 247 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 HRASP01112 189 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 IFNA10P01566 189 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 RBP4P02753 201 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 IGHV1-8P0DP01 117 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 MDKP21741 143 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 GPX4P36969 197 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 SRP14P37108 136 aaKnown RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 CDC34P49427 236 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 FAM3BP58499 235 aaPredicted RBP10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 TMEM183AQ8IXX5 376 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 OR51G1Q8NGK1 321 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 R3HDM4Q96D70 268 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 BTF3L4Q96K17 158 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 S1PR3Q99500 378 aa10.7□□□□□ -0.7
SQSTM1-201ENST00000360718 PDE6DO43924 150 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 PAGE4O60829 102 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 HPRT1P00492 218 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 CD1BP29016 333 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 TMEM249Q2WGJ8 235 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 RPL39P5Q59GN2 51 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 KCNIP4Q6PIL6 250 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 CLEC2AQ6UVW9 174 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 C11orf42Q8N5U0 333 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 FAM168AQ92567 244 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 PACRGQ96M98 296 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 PSMG3-AS1Q96PY0 264 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 PIMREGQ9BSJ6 248 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 BPESC1Q9GZL8 116 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 ONECUT1Q9UBC0 465 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 SAA2-SAA4A0A096LPE2 208 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 A0A1W2PPV4 95 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 LINC00473A8K010 186 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 NDUFS8O00217 210 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 SAA2P0DJI9 122 aaPredicted RBP10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 DUTP33316 252 aaKnown RBP10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 C8orf31Q8N9H6 132 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 LY6G5BQ8NDX9 201 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 ADTRPQ96IZ2 230 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 TMEM133Q9H2Q1 129 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 ZNRD1Q9P1U0 126 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 WDR83OSQ9Y284 106 aa10.69□□□□□ -0.7
SQSTM1-201ENST00000360718 A0A087X0M5 115 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 A0A1B0GX30 115 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 C22orf46C9J442 243 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 C11orf94C9JXX5 98 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 PROP1O75360 226 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 DLX1P56177 255 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 LINC00205P59089 165 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 SPCS3P61009 180 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 C9orf152Q5JTZ5 239 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 C1orf229Q6ZS94 237 aaPredicted RBP10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 NECAP1Q8NC96 275 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 OR10X1Q8NGY0 326 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 OR2T10Q8NGZ9 312 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 OR4A16Q8NH70 328 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 OR9G1Q8NH87 305 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 ACY3Q96HD9 319 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 PRDM13Q9H4Q3 707 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 ABCA2Q9BZC7 2435 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 C15orf62A8K5M9 175 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 J3QR06 171 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 KIR2DS2P43631 304 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 THBS3P49746 956 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 ERVK-16P61578 105 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 AARDQ4LEZ3 155 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 ABHD12Q8N2K0 398 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 OR52E5Q8NH55 327 aa10.68□□□□□ -0.7
SQSTM1-201ENST00000360718 HIST1H2BLQ99880 126 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms