RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ARL16Q0P5N6 197 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 RPP25LQ8N5L8 163 aaKnown RBP10.5□□□□□ -0.73
CLK3-201ENST00000345005 ZNF439Q8NDP4 499 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 OR10P1Q8NGE3 313 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 OR10G9Q8NGN4 311 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 OR10G7Q8NGN6 311 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 PARLQ9H300 379 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 VSIRQ9H7M9 311 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 CTSZQ9UBR2 303 aa10.5□□□□□ -0.73
CLK3-201ENST00000345005 LRBAP50851 2863 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 HRNRQ86YZ3 2850 aaPredicted RBP10.49□□□□□ -0.73
CLK3-201ENST00000345005 LINC00473A8K010 186 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 F6UZH7 168 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 C19orf84I3L1E1 186 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 M0R1X1 148 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 RAMP3O60896 148 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 PROP1O75360 226 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 PRAMEF5Q5TYX0 476 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 HAPLN4Q86UW8 402 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 LEAP2Q969E1 77 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 TRAV9-1A0A075B6T8 112 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 UBE2L5PA0A1B0GUS4 154 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 IGHV3-7P01780 117 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 KIR2DS2P43631 304 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 ELLP55199 621 aaPredicted RBP10.49□□□□□ -0.73
CLK3-201ENST00000345005 BRWD1-AS2P59051 145 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 RPP30P78346 268 aaKnown RBP10.49□□□□□ -0.73
CLK3-201ENST00000345005 ZNF816Q0VGE8 651 aaPredicted RBP10.49□□□□□ -0.73
CLK3-201ENST00000345005 FOXL1Q12952 345 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 VWC2Q2TAL6 325 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 SLC25A48Q6ZT89 311 aaKnown RBP10.49□□□□□ -0.73
CLK3-201ENST00000345005 OR4F5Q8NH21 305 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 RAB1CQ92928 201 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 TIMD4Q96H15 378 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 OR4F4Q96R69 305 aa10.49□□□□□ -0.73
CLK3-201ENST00000345005 A6NNC1 897 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 RBFOX2O43251 390 aaKnown RBP eCLIP10.48□□□□□ -0.73
CLK3-201ENST00000345005 MMP23AO75900 390 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 GOSR1O95249 250 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 KRASP01116 189 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 PLA2G2AP14555 144 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 CNN1P51911 297 aaKnown RBP10.48□□□□□ -0.73
CLK3-201ENST00000345005 GNB2P62879 340 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 RPL39P5Q59GN2 51 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 RPUSD4Q96CM3 377 aaKnown RBP10.48□□□□□ -0.73
CLK3-201ENST00000345005 ADTRPQ96IZ2 230 aa10.48□□□□□ -0.73
CLK3-201ENST00000345005 A0A1W2PPR1 153 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 ZNF705GA8MUZ8 300 aaPredicted RBP10.47□□□□□ -0.73
CLK3-201ENST00000345005 MPDU1O75352 247 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 S1PR2O95136 353 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 HPRT1P00492 218 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 CCL3L1P16619 93 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 G6PCP35575 357 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 THBS3P49746 956 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 IZUMO4Q1ZYL8 232 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 UTF1Q5T230 341 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 C1orf194Q5T5A4 169 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 SSX7Q7RTT5 188 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 MRPL41Q8IXM3 137 aaKnown RBP10.47□□□□□ -0.73
CLK3-201ENST00000345005 LYG1Q8N1E2 194 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 S1PR3Q99500 378 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 PCGF1Q9BSM1 259 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 UBTD1Q9HAC8 227 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 KCNIP2Q9NS61 270 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 SAA2-SAA4A0A096LPE2 208 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 A0A1W2PPQ1 181 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 FCGR3BO75015 233 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 RPLP1P05386 114 aaKnown RBP10.47□□□□□ -0.73
CLK3-201ENST00000345005 P0C879 139 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 SAA2P0DJI9 122 aaPredicted RBP10.47□□□□□ -0.73
CLK3-201ENST00000345005 ZNF25P17030 456 aaPredicted RBP10.47□□□□□ -0.73
CLK3-201ENST00000345005 GNG10P50151 68 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 RPL19P84098 196 aaKnown RBP10.47□□□□□ -0.73
CLK3-201ENST00000345005 TMEM155Q4W5P6 130 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 FFAR4Q5NUL3 377 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 OR8G2PQ6IF36 304 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 H2BFWTQ7Z2G1 175 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 SNHG12Q9BXW3 62 aa10.47□□□□□ -0.73
CLK3-201ENST00000345005 OR10J1P30954 320 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 DLX6P56179 175 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 LINC00205P59089 165 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 PAFAH1B2P68402 229 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 ZNF841Q6ZN19 808 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 GBGT1Q8N5D6 347 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 C8orf31Q8N9H6 132 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 OR8B3Q8NGG8 313 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 OR8B2Q96RD0 313 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 TMEM208Q9BTX3 173 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 MALRD1Q5VYJ5 2156 aa10.46□□□□□ -0.74
CLK3-201ENST00000345005 KIR2DL5BA0A0G2JN68 375 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 KIR2DL5BA0A0G2JPC4 375 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 FAM90A9PA6NNJ1 464 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 RANP62826 216 aaKnown RBP10.45□□□□□ -0.74
CLK3-201ENST00000345005 ACSM6Q6P461 480 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 KIR2DL5AQ8N109 375 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 OR4S2Q8NH73 311 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 TMEM37Q8WXS4 190 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 DDB2Q92466 427 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 FKBP11Q9NYL4 201 aa10.45□□□□□ -0.74
CLK3-201ENST00000345005 FUT9Q9Y231 359 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms