RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF705BP0CI00 300 aaPredicted RBP8.33□□□□□ -1.08
USP54-201ENST00000339859 LDLRAD2Q5SZI1 272 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 LINC00305Q7Z4B0 112 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 LDLRAD3Q86YD5 345 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 TXNDC17Q9BRA2 123 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 TRAV14DV4A0A0A6YYC5 116 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 TEX50A0A1B0GTY4 177 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 NABP2Q9BQ15 211 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 KAAG1Q9UBP8 84 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 NUP210LQ5VU65 1888 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 LMO1P25800 156 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 PAX8Q06710 450 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 STHQ8IWL8 128 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 GATAD1Q8WUU5 269 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 LDLRAD4O15165 306 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 ZNF207O43670 478 aaKnown RBP8.33□□□□□ -1.08
USP54-201ENST00000339859 GPX1P07203 203 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 Q6ZS49 121 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 IGHV3-35A0A0C4DH35 117 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 CGB1A6NKQ9 187 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 SLC7A5P1Q8MH63 180 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 MGPP08493 103 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 HIST1H1AQ02539 215 aaPredicted RBP8.32□□□□□ -1.08
USP54-201ENST00000339859 SIGLECL1Q8N7X8 197 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 KLHL30-AS1Q8NEE0 82 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 OR52E5Q8NH55 327 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 C10orf105Q8TEF2 133 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 RSG1Q9BU20 258 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 TMEM189A5PLL7 270 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 MFSD2BA6NFX1 497 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 RAMP3O60896 148 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 ANAPC16Q96DE5 110 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 AQP10Q96PS8 301 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 MBNL3Q9NUK0 354 aaKnown RBP8.32□□□□□ -1.08
USP54-201ENST00000339859 IGHV3-66A0A0C4DH42 116 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 PGPA6NDG6 321 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 PLA2G2AP14555 144 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 SRSF8Q9BRL6 282 aaKnown RBP8.32□□□□□ -1.08
USP54-201ENST00000339859 FER1L5A0AVI2 2057 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 IGHV4-39P01824 125 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 IL6RP08887 468 aaPredicted RBP8.32□□□□□ -1.08
USP54-201ENST00000339859 RPS20P60866 119 aaKnown RBP8.32□□□□□ -1.08
USP54-201ENST00000339859 SPSB3Q6PJ21 355 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 FA2HQ7L5A8 372 aa8.32□□□□□ -1.08
USP54-201ENST00000339859 NCOR1O75376 2440 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 SLC31A2O15432 143 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 IGHV3-48P01763 117 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 CLLU1Q5K131 121 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 SPANXN1Q5VSR9 72 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 LOXP28300 417 aaPredicted RBP8.31□□□□□ -1.08
USP54-201ENST00000339859 C1orf122Q6ZSJ8 110 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 TMEM167AQ8TBQ9 72 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 LEPP41159 167 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 FABP9Q0Z7S8 132 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 ZNF439Q8NDP4 499 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 OR1P1Q8NH06 330 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 MCRIP2Q9BUT9 160 aaKnown RBP8.31□□□□□ -1.08
USP54-201ENST00000339859 RPRMQ9NS64 109 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 SUMO1P63165 101 aaKnown RBP8.31□□□□□ -1.08
USP54-201ENST00000339859 PNRC1Q12796 327 aaPredicted RBP8.31□□□□□ -1.08
USP54-201ENST00000339859 IGHV4-30-2A0A087WSY4 118 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 AMY1AP04745 511 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 WDR73Q6P4I2 378 aa8.31□□□□□ -1.08
USP54-201ENST00000339859 SDK2Q58EX2 2172 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 KIF26BQ2KJY2 2108 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 QRFPP83859 136 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 RUNX1Q01196 453 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 TMEM249Q2WGJ8 235 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 WDR86Q86TI4 376 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 LINC00527Q9UJ94 153 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 DUSP14O95147 198 aaKnown RBP8.3□□□□□ -1.08
USP54-201ENST00000339859 HLA-DRB1P01911 266 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 RAB5AP20339 215 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 DTX2Q86UW9 622 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 NR2C2APQ86WQ0 139 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 FAM181BA6NEQ2 426 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 A0A1W2PPQ1 181 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 SIGIRRQ6IA17 410 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 IL17RELQ6ZVW7 336 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 PIP4P2Q8N4L2 257 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 JKAMPQ9P055 326 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 H0Y8G0 127 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 CX3CL1P78423 397 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 TMEM116Q8NCL8 245 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 ST6GAL2Q96JF0 529 aa8.3□□□□□ -1.08
USP54-201ENST00000339859 KRTAP27-1Q3LI81 207 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 SLC50A1Q9BRV3 221 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 PSMG3Q9BT73 122 aaPredicted RBP8.29□□□□□ -1.08
USP54-201ENST00000339859 IGHV3OR16-13A0A075B7E8 117 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 IGHV3-49A0A0A0MS15 119 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 IGHV3-74A0A0B4J1X5 117 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 IGFBP2P18065 325 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 ZNF585BQ52M93 769 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 LCNL1Q6ZST4 164 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 OR10G8Q8NGN5 311 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 FUT9Q9Y231 359 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 FAM186AA6NE01 2351 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 HOXB4P17483 251 aaPredicted RBP8.29□□□□□ -1.08
USP54-201ENST00000339859 DGAT2L7PQ6IED9 249 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 LINC00311Q8N616 119 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms