RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 RAMP3O60896 148 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 ERCC8Q13216 396 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 RNASE13Q5GAN3 156 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 PEAR1Q5VY43 1037 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 CYP2G1PQ6ZSU1 146 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 ZNF784Q8NCA9 323 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 TM4SF19Q96DZ7 209 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 GPR88Q9GZN0 384 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 TRBV19A0A075B6N1 114 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 LILRA5A6NI73 299 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 TMEM229AB2RXF0 380 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 G3V2L1 256 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 IL6RP08887 468 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 GATA2P23769 480 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 CXCL5P42830 114 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 RND3P61587 244 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 ZNF362Q5T0B9 420 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 NEGR1Q7Z3B1 354 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 ORMDL1Q9P0S3 153 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 PHRF1Q9P1Y6 1649 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV3-53P01767 116 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 CXCL3P19876 107 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 Q8IYB0 196 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 C17orf47Q8NEP4 570 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 FGF20Q9NP95 211 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 KISS1Q15726 138 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 HIST1H2BLQ99880 126 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 MYH3P11055 1940 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 MYH11P35749 1972 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 BCORQ6W2J9 1755 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 DEFB109BQ30KR1 87 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 PLEKHB2Q96CS7 222 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 GPHA2Q96T91 129 aa6.48□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV1-18A0A0C4DH31 117 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 A0A1B0GUT8 65 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 H0Y9J4 135 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 CCL21O00585 134 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 INSL4Q14641 139 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 AFDNP55196 1824 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 SERP2Q8N6R1 65 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 CELA2BP08218 269 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 NPPCP23582 126 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 GZMMP51124 257 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 TLNRD1Q9H1K6 362 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 CCDC88AQ3V6T2 1871 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV3OR16-10A0A075B7F0 116 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV3OR16-8A0A075B7F1 116 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 SLC25A16P16260 332 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 ZNF474Q6S9Z5 364 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 SPINT4Q6UDR6 99 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 ASCL5Q7RTU5 278 aa6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 MCRIP2Q9BUT9 160 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-201ENST00000313860 USP17L23D6RBM5 183 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 F2Z2F3 143 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV2-70P01814 119 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV4-30-4P0DP06 118 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV4-31P0DP07 118 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 C21orf62Q9NYP8 219 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 PYYP10082 97 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 ELNP15502 786 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 RPL18Q07020 188 aaKnown RBP6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 KLK9Q9UKQ9 250 aa6.46□□□□□ -1.37
LIMCH1-201ENST00000313860 TRAV26-1A0A087WT03 109 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 F8VVB4 439 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 F8VWA3 439 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 ELANEP08246 267 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 FKBP1BP68106 108 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 NKG7Q16617 165 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 RNF144BQ7Z419 303 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 STHQ8IWL8 128 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 UMODL1-AS1Q8N2C9 162 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 OR11G2Q8NGC1 345 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 SMIM8Q96KF7 97 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 RNF39Q9H2S5 420 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A0A6YYD5 115 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A0B4J2E0 115 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 MYMXA0A1B0GTQ4 84 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A1B0GX12 115 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 H0YGG7 62 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 TRBV12-3P01733 135 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 CFHR2P36980 270 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 TEX43Q6ZNM6 134 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 GLIPR2Q9H4G4 154 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 KIF13BQ9NQT8 1826 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 IGHV2-70DA0A0C4DH43 119 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 KIR2DS5A0A0G2JLQ3 304 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A0G2JNG1 304 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A1W2PR77 199 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 FGF6P10767 208 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 CLEC19AQ6UXS0 136 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 RNF152Q8N8N0 203 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 LHX9Q9NQ69 397 aa6.46□□□□□ -1.38
LIMCH1-201ENST00000313860 ATOX1O00244 68 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 GPBAR1Q8TDU6 330 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 WIPF2Q8TF74 440 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 HEXA-AS1Q9H8Q6 139 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 KIF13AQ9H1H9 1805 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 LOC102723996A0A087X1L8 192 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 ZNF561-AS1K7EIQ3 104 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 CTAG2O75638 210 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms