RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TOR2AQ5JU69 321 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 C19orf35Q6ZS72 473 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 ZNF329Q86UD4 541 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 VSTM2AQ8TAG5 236 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 IL22RA2Q969J5 263 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 MMP24Q9Y5R2 645 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 TENM1Q9UKZ4 2725 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 IL6RP08887 468 aaPredicted RBP14.32□□□□□ -0.12
HMGA1-201ENST00000311487 EGR2P11161 476 aaPredicted RBP14.32□□□□□ -0.12
HMGA1-201ENST00000311487 NMSQ5H8A3 153 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 BAP18Q8IXM2 172 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 LFNGQ8NES3 379 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 OR10W1Q8NGF6 305 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 ZFP57Q9NU63 452 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 OR51B2Q9Y5P1 312 aa14.32□□□□□ -0.12
HMGA1-201ENST00000311487 ST8SIA3O43173 380 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 REG1AP05451 166 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 VDAC1P21796 283 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 ZNF562Q6V9R5 426 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 MMD2Q8IY49 270 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 LINC01006Q8NI28 216 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 ARPC1AQ92747 370 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 SPIN2AQ99865 258 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 SPIN2BQ9BPZ2 258 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 TEX50A0A1B0GTY4 177 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 MFSD2BA6NFX1 497 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 CGB1A6NKQ9 187 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 TAAR5O14804 337 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 IGHG2P01859 326 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 VDAC2P45880 294 aaPredicted RBP14.31□□□□□ -0.12
HMGA1-201ENST00000311487 COMPP49747 757 aaPredicted RBP14.31□□□□□ -0.12
HMGA1-201ENST00000311487 C11orf44Q8N8P7 122 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 OR2T6Q8NHC8 308 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 SRSF12Q8WXF0 261 aaKnown RBP14.31□□□□□ -0.12
HMGA1-201ENST00000311487 COMMD5Q9GZQ3 224 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 ZC4H2Q9NQZ6 224 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 SERTAD4Q9NUC0 356 aa14.31□□□□□ -0.12
HMGA1-201ENST00000311487 RCL1Q9Y2P8 373 aaKnown RBP14.31□□□□□ -0.12
HMGA1-201ENST00000311487 I3L521 148 aa14.3□□□□□ -0.12
HMGA1-201ENST00000311487 ATG12O94817 140 aa14.3□□□□□ -0.12
HMGA1-201ENST00000311487 LCNL1Q6ZST4 164 aa14.3□□□□□ -0.12
HMGA1-201ENST00000311487 PFDN2Q9UHV9 154 aa14.3□□□□□ -0.12
HMGA1-201ENST00000311487 COL6A5A8TX70 2615 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 C15orf61A6NNL5 157 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 RPL7L1Q6DKI1 246 aaKnown RBP14.29□□□□□ -0.12
HMGA1-201ENST00000311487 OR5T1Q8NG75 326 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 C11orf1Q9H5F2 150 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 FBXL17Q9UF56 701 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 IFNA17P01571 189 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 P2RY1P47900 373 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 OR4A5Q8NH83 315 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 LSM10Q969L4 123 aaKnown RBP14.29□□□□□ -0.12
HMGA1-201ENST00000311487 TMEM14BQ9NUH8 114 aa14.29□□□□□ -0.12
HMGA1-201ENST00000311487 TEX46H3BTG2 121 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 PRH1P02810 166 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 AREGP15514 252 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 NKX2-1P43699 371 aaPredicted RBP14.28□□□□□ -0.12
HMGA1-201ENST00000311487 RPL27AP46776 148 aaKnown RBP14.28□□□□□ -0.12
HMGA1-201ENST00000311487 DEFA5Q01523 94 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 CXorf66Q5JRM2 361 aaPredicted RBP14.28□□□□□ -0.12
HMGA1-201ENST00000311487 ASPHD1Q5U4P2 390 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 UNQ5815/PRO19632Q6UWF5 114 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 MAGT1Q9H0U3 335 aa14.28□□□□□ -0.12
HMGA1-201ENST00000311487 FAM122CQ6P4D5 195 aa14.27□□□□□ -0.12
HMGA1-201ENST00000311487 Q8N2B8 174 aa14.27□□□□□ -0.12
HMGA1-201ENST00000311487 TMED6Q8WW62 240 aa14.27□□□□□ -0.12
HMGA1-201ENST00000311487 BSCL2Q96G97 398 aaPredicted RBP14.27□□□□□ -0.12
HMGA1-201ENST00000311487 C19orf24Q9BVV8 132 aa14.27□□□□□ -0.12
HMGA1-201ENST00000311487 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.27□□□□□ -0.12
HMGA1-201ENST00000311487 PRNDQ9UKY0 176 aa14.27□□□□□ -0.12
HMGA1-201ENST00000311487 POLR2GP62487 172 aaKnown RBP eCLIP14.27□□□□□ -0.13
HMGA1-201ENST00000311487 STPG2Q8N412 459 aa14.27□□□□□ -0.13
HMGA1-201ENST00000311487 SMIM3Q9BZL3 60 aa14.27□□□□□ -0.13
HMGA1-201ENST00000311487 FOXA2Q9Y261 457 aaPredicted RBP14.27□□□□□ -0.13
HMGA1-201ENST00000311487 RNF114Q9Y508 228 aa14.27□□□□□ -0.13
HMGA1-201ENST00000311487 TRAV41A0A0B4J266 112 aa14.26□□□□□ -0.13
HMGA1-201ENST00000311487 PIGBOS1A0A0B4J2F0 54 aa14.26□□□□□ -0.13
HMGA1-201ENST00000311487 TEX22C9J3V5 150 aa14.26□□□□□ -0.13
HMGA1-201ENST00000311487 EIF5AP63241 154 aaKnown RBP14.26□□□□□ -0.13
HMGA1-201ENST00000311487 ID3Q02535 119 aa14.26□□□□□ -0.13
HMGA1-201ENST00000311487 HSD17B13Q7Z5P4 300 aaPredicted RBP14.26□□□□□ -0.13
HMGA1-201ENST00000311487 CENPVQ7Z7K6 275 aaPredicted RBP14.26□□□□□ -0.13
HMGA1-201ENST00000311487 SGMS2Q8NHU3 365 aa14.26□□□□□ -0.13
HMGA1-201ENST00000311487 A0A1W2PN81 502 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 AP4M1O00189 453 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 FGF2P09038 288 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 CHRNA7P36544 502 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 RPL15P61313 204 aaKnown RBP14.25□□□□□ -0.13
HMGA1-201ENST00000311487 KLHDC1Q8N7A1 406 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 OR4F5Q8NH21 305 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 MS4A10Q96PG2 267 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 NDUFA4L2Q9NRX3 87 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 ZNF355PQ9NSJ1 428 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 SOX15O60248 233 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 PITX3O75364 302 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 SLC25A6P12236 298 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 WT1-ASQ06250 92 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 EIF4E3Q8N5X7 224 aaKnown RBP14.25□□□□□ -0.13
HMGA1-201ENST00000311487 OR1L8Q8NGR8 309 aa14.25□□□□□ -0.13
HMGA1-201ENST00000311487 LRRC20Q8TCA0 184 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms