RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SSBP4Q9BWG4 385 aaPredicted RBP14.6□□□□□ -0.07
SYNPO-201ENST00000307662 SPTBP11277 2137 aa14.6□□□□□ -0.07
SYNPO-201ENST00000307662 UNC13CQ8NB66 2214 aa14.6□□□□□ -0.07
SYNPO-201ENST00000307662 SPAARA0A1B0GVQ0 90 aa14.6□□□□□ -0.07
SYNPO-201ENST00000307662 TMEM50AO95807 157 aa14.6□□□□□ -0.07
SYNPO-201ENST00000307662 NAPSAO96009 420 aa14.6□□□□□ -0.07
SYNPO-201ENST00000307662 A0A1W2PR77 199 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 APOMO95445 188 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 NRN1LQ496H8 165 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 CDCP2Q5VXM1 449 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 Q9H3A6 140 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 CHCHD2Q9Y6H1 151 aaPredicted RBP14.59□□□□□ -0.07
SYNPO-201ENST00000307662 FAM159AQ6UWV7 190 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 RNASEH2CQ8TDP1 164 aaKnown RBP14.59□□□□□ -0.07
SYNPO-201ENST00000307662 GDF15Q99988 308 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 REPIN1Q9BWE0 567 aaKnown RBP14.59□□□□□ -0.07
SYNPO-201ENST00000307662 IGKV3D-11A0A0A0MRZ8 115 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 DLEU1O43261 78 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 CCL1P22362 96 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 TSPOP30536 169 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 RIPPLY3P57055 190 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 TMEM144Q7Z5S9 345 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 OCC1Q8TAD7 63 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 EEF1AKMT3Q96AZ1 226 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 GATA2P23769 480 aaPredicted RBP14.59□□□□□ -0.07
SYNPO-201ENST00000307662 C1orf194Q5T5A4 169 aa14.59□□□□□ -0.07
SYNPO-201ENST00000307662 MUC21A0A0G2JKD1 596 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 MUC21A0A140T8X8 626 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 MUC21Q5SSG8 566 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 TEX38Q6PEX7 206 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 FER1L6-AS1Q8NA97 138 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 ORAOV1Q8WV07 137 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 MRAP2Q96G30 205 aa14.58□□□□□ -0.07
SYNPO-201ENST00000307662 IGKV1-9A0A0C4DH69 117 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 SIGMAR1Q99720 223 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 NHP2Q9NX24 153 aaKnown RBP14.58□□□□□ -0.08
SYNPO-201ENST00000307662 A0A0A6YYD4 124 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 LINC00614P0C842 121 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 CEACAM1P13688 526 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 FAM106AQ4KMX7 169 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.58□□□□□ -0.08
SYNPO-201ENST00000307662 BEND2Q8NDZ0 799 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 ELOVL5Q9NYP7 299 aa14.58□□□□□ -0.08
SYNPO-201ENST00000307662 NDUFA3O95167 84 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 CTSSP25774 331 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 RRN3P1Q2M238 152 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 PILRBQ9UKJ0 227 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 ANKRD36A6QL64 1941 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 LEPP41159 167 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 TIMM23BQ5SRD1 257 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 M0R381 172 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 CD55P08174 381 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 VSIRQ9H7M9 311 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 ZNF703Q9H7S9 590 aaPredicted RBP14.57□□□□□ -0.08
SYNPO-201ENST00000307662 OTOFQ9HC10 1997 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 TM4SF5O14894 197 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 ASIPP42127 132 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 LOXL4Q96JB6 756 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 ST20Q9HBF5 79 aa14.57□□□□□ -0.08
SYNPO-201ENST00000307662 CCL21O00585 134 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 PNKDQ8N490 385 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 PLPPR1Q8TBJ4 325 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 CHCHD1Q96BP2 118 aaKnown RBP14.56□□□□□ -0.08
SYNPO-201ENST00000307662 OTORQ9NRC9 128 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 SEC11AP67812 179 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 PYY3Q5JQD4 70 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 LINC00271P0C7V0 271 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 LYZL4Q96KX0 146 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 TGFAP01135 160 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 Q6ZT83 130 aa14.56□□□□□ -0.08
SYNPO-201ENST00000307662 RP1P56715 2156 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 TRAV1-1A0A0B4J248 108 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 KBTBD11-OT1A0A1B0GTJ5 212 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 A0A1W2PRE2 83 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 HBDP02042 147 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 SFTPCP11686 197 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 OR2K2Q8NGT1 345 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 TMEM171Q8WVE6 324 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 RAX2Q96IS3 184 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 C2orf88Q9BSF0 95 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 IGHV3-35A0A0C4DH35 117 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 SUMO2P61956 95 aaKnown RBP14.55□□□□□ -0.08
SYNPO-201ENST00000307662 GNG5P63218 68 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 FOXA2Q9Y261 457 aaPredicted RBP14.55□□□□□ -0.08
SYNPO-201ENST00000307662 NDUFS6O75380 124 aaKnown RBP14.55□□□□□ -0.08
SYNPO-201ENST00000307662 NUDT11Q96G61 164 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 PIKFYVEQ9Y2I7 2098 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 IGKV1D-8A0A087WSZ0 117 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 TRAV8-2A0A0B4J237 113 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 NPFFO15130 113 aa14.55□□□□□ -0.08
SYNPO-201ENST00000307662 ZNF236Q9UL36 1845 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 RFPL3SP0C7P2 107 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 BRCA1P38398 1863 aaKnown RBP14.54□□□□□ -0.08
SYNPO-201ENST00000307662 PLXNA1Q9UIW2 1896 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 TIAF1O95411 115 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 LHFPL1Q86WI0 220 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 GP6Q9HCN6 339 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 FOXL1Q12952 345 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 FADS6Q8N9I5 356 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 PRR7Q8TB68 274 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms