RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 RNF126Q9BV68 326 aa12.57□□□□□ -0.4
SCN3B-201ENST00000299333 PTGDSP41222 190 aa12.57□□□□□ -0.4
SCN3B-201ENST00000299333 TRIP6Q15654 476 aaKnown RBP12.57□□□□□ -0.4
SCN3B-201ENST00000299333 MBNL3Q9NUK0 354 aaKnown RBP12.57□□□□□ -0.4
SCN3B-201ENST00000299333 ZNF646O15015 1829 aaPredicted RBP12.56□□□□□ -0.4
SCN3B-201ENST00000299333 CXCL1P09341 107 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 RSPO4Q2I0M5 234 aaPredicted RBP12.56□□□□□ -0.4
SCN3B-201ENST00000299333 DEFB123Q8N688 67 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 KLF12Q9Y4X4 402 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 RP1L1Q8IWN7 2480 aaPredicted RBP12.56□□□□□ -0.4
SCN3B-201ENST00000299333 HBDP02042 147 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 GNG5P63218 68 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 TPRP12270 2363 aaKnown RBP12.56□□□□□ -0.4
SCN3B-201ENST00000299333 ITGB1BP1O14713 200 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 LHX8Q68G74 356 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 NXT2Q9NPJ8 142 aaKnown RBP12.56□□□□□ -0.4
SCN3B-201ENST00000299333 SEMA5BQ9P283 1151 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 IGKV1D-42A0A075B6H8 117 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 EREGO14944 169 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 SNRPD3P62318 126 aaKnown RBP12.56□□□□□ -0.4
SCN3B-201ENST00000299333 Q6AWC8 147 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 EEF1AKMT3Q96AZ1 226 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 Q9H3A6 140 aa12.56□□□□□ -0.4
SCN3B-201ENST00000299333 TRACP01848 142 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 C1orf194Q5T5A4 169 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 FAM214BQ7L5A3 538 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 CIARTQ8N365 385 aaPredicted RBP12.55□□□□□ -0.4
SCN3B-201ENST00000299333 OR9G1Q8NH87 305 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 TSSC4Q9Y5U2 329 aaPredicted RBP12.55□□□□□ -0.4
SCN3B-201ENST00000299333 COLCA2A8K830 154 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 C17orf98A8MV24 154 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 BTCP35070 178 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 KLF14Q8TD94 323 aaPredicted RBP12.55□□□□□ -0.4
SCN3B-201ENST00000299333 SLC25A2Q9BXI2 301 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 C21orf140B9A014 251 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 GZMBP10144 247 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 FOXA2Q9Y261 457 aaPredicted RBP12.55□□□□□ -0.4
SCN3B-201ENST00000299333 TRIP11Q15643 1979 aa12.55□□□□□ -0.4
SCN3B-201ENST00000299333 UCP1P25874 307 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 CCL20P78556 96 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 LY6EQ16553 131 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 IGKCP01834 107 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 CRIM1Q9NZV1 1036 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 GGTLC3B5MD39 225 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 NPSP0C0P6 89 aa12.54□□□□□ -0.4
SCN3B-201ENST00000299333 RASL11AQ6T310 242 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 STRCQ7RTU9 1775 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 B5MCH6 92 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 SHISA5Q8N114 240 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 APOBEC4Q8WW27 367 aaKnown RBP12.53□□□□□ -0.4
SCN3B-201ENST00000299333 YAE1D1Q9NRH1 226 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 TMEM74BQ9NUR3 256 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 IGHV3OR16-8A0A075B7F1 116 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 GAGE2AQ6NT46 116 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 GNB1LQ9BYB4 327 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 LGALS1P09382 135 aaKnown RBP12.53□□□□□ -0.4
SCN3B-201ENST00000299333 RNASE4P34096 147 aaKnown RBP12.53□□□□□ -0.4
SCN3B-201ENST00000299333 ZNRF1Q8ND25 227 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 NEUROG3Q9Y4Z2 214 aa12.53□□□□□ -0.4
SCN3B-201ENST00000299333 RP1P56715 2156 aa12.52□□□□□ -0.4
SCN3B-201ENST00000299333 DICER1Q9UPY3 1922 aaKnown RBP12.52□□□□□ -0.4
SCN3B-201ENST00000299333 FGF16O43320 207 aa12.52□□□□□ -0.4
SCN3B-201ENST00000299333 FOXL1Q12952 345 aa12.52□□□□□ -0.4
SCN3B-201ENST00000299333 RNF182Q8N6D2 247 aa12.52□□□□□ -0.4
SCN3B-201ENST00000299333 OCC1Q8TAD7 63 aa12.52□□□□□ -0.4
SCN3B-201ENST00000299333 CHTOPQ9Y3Y2 248 aaKnown RBP12.52□□□□□ -0.4
SCN3B-201ENST00000299333 ZNFX1Q9P2E3 1918 aaKnown RBP12.52□□□□□ -0.4
SCN3B-201ENST00000299333 A0A1B0GTI1 187 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 TSPAN7P41732 249 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 LY6G6FQ5SQ64 297 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 TMEM171Q8WVE6 324 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 OR5P3Q8WZ94 311 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 IFITM1P13164 125 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 MPV17L2Q567V2 206 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 KIR3DL3Q8N743 410 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 NAPSAO96009 420 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 COX5BP10606 129 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 EVI2AP22794 236 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 ERVK11-1P61568 191 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 C2orf82Q6UX34 121 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 PHLDA1Q8WV24 401 aaPredicted RBP12.52□□□□□ -0.41
SCN3B-201ENST00000299333 CCDC88CQ9P219 2028 aa12.52□□□□□ -0.41
SCN3B-201ENST00000299333 C4orf51C9J302 202 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 C12orf77C9JDV5 145 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 F8VVB4 439 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 F8VWA3 439 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 CD69Q07108 199 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 CLEC7AQ9BXN2 247 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 SRXN1Q9BYN0 137 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 SEPSECSQ9HD40 501 aaKnown RBP12.51□□□□□ -0.41
SCN3B-201ENST00000299333 ERG28Q9UKR5 140 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 A0A1W2PRE2 83 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 FOCADQ5VW36 1801 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 KIAA0100Q14667 2235 aaKnown RBP12.51□□□□□ -0.41
SCN3B-201ENST00000299333 IGHV3-64A0A075B6Q5 118 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 NCR2O95944 276 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 UMODP07911 640 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 TDGF1P13385 188 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 WFDC12Q8WWY7 111 aa12.51□□□□□ -0.41
SCN3B-201ENST00000299333 DLX4Q92988 240 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms