RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CDX1P47902 265 aaPredicted RBP9.63□□□□□ -0.87
USP53-201ENST00000274030 LEMD1Q68G75 181 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 GP6Q9HCN6 339 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 FAM209BQ5JX69 171 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 SAPCD1Q5SSQ6 148 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 OR52E5Q8NH55 327 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 SELENOKQ9Y6D0 94 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 MTCL1Q9Y4B5 1905 aaKnown RBP9.63□□□□□ -0.87
USP53-201ENST00000274030 KIF26BQ2KJY2 2108 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 NPFFO15130 113 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 RAB9AP51151 201 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 TMEM30BQ3MIR4 351 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 ARPC1AQ92747 370 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 ST6GALNAC6Q969X2 333 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 TUBA4BQ9H853 241 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 CD55P08174 381 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 HTN3P15516 51 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 ZNF506Q5JVG8 444 aa9.63□□□□□ -0.87
USP53-201ENST00000274030 PINLYPA6NC86 204 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 PRR32B1ATL7 298 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 TMEM136Q6ZRR5 245 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 PARP14Q460N5 1801 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 ZNF883P0CG24 379 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 GPX4P36969 197 aaPredicted RBP9.62□□□□□ -0.87
USP53-201ENST00000274030 CIRBPQ14011 172 aaKnown RBP9.62□□□□□ -0.87
USP53-201ENST00000274030 ZNF319Q9P2F9 582 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 FOXD3Q9UJU5 478 aaPredicted RBP9.62□□□□□ -0.87
USP53-201ENST00000274030 TMEM250H0YL14 139 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 LY6DQ14210 128 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 TEX29Q8N6K0 151 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 C14orf144Q96I85 54 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 IGKV1-9A0A0C4DH69 117 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 PEX7O00628 323 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 SAA1P0DJI8 122 aaPredicted RBP9.62□□□□□ -0.87
USP53-201ENST00000274030 LYZL4Q96KX0 146 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 TMEM70Q9BUB7 260 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 NOTCH3Q9UM47 2321 aa9.62□□□□□ -0.87
USP53-201ENST00000274030 SAA2-SAA4A0A096LPE2 208 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 TM4SF5O14894 197 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 SAA2P0DJI9 122 aaPredicted RBP9.61□□□□□ -0.87
USP53-201ENST00000274030 C11orf44Q8N8P7 122 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 PQLC2LA1A4F0 135 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 RAMP3O60896 148 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 IGLV3-19P01714 112 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 EFNB1P98172 346 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 FGFBP3Q8TAT2 258 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 MRAP2Q96G30 205 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 PRELID3AQ96N28 172 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 MYO7BQ6PIF6 2116 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 RNASE4P34096 147 aaKnown RBP9.61□□□□□ -0.87
USP53-201ENST00000274030 FAM19A2Q8N3H0 131 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 KIR3DL3Q8N743 410 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 DUX3Q96PT4 197 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 IQCF6A8MYZ5 107 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 APOHP02749 345 aaPredicted RBP9.61□□□□□ -0.87
USP53-201ENST00000274030 FOXG1P55316 489 aaPredicted RBP9.61□□□□□ -0.87
USP53-201ENST00000274030 GNG5P63218 68 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 MRPL13Q9BYD1 178 aaKnown RBP9.61□□□□□ -0.87
USP53-201ENST00000274030 RNF222A6NCQ9 220 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 REC114Q7Z4M0 266 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 C1orf162Q8NEQ5 155 aaPredicted RBP9.61□□□□□ -0.87
USP53-201ENST00000274030 ZNF414Q96IQ9 312 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 TNFRSF18Q9Y5U5 241 aa9.61□□□□□ -0.87
USP53-201ENST00000274030 TBR1Q16650 682 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 FAM71F2Q6NXP2 309 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 LHFPL4Q7Z7J7 247 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 NEU4Q8WWR8 484 aaPredicted RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 SEMA5BQ9P283 1151 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 SCN8AQ9UQD0 1980 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 ABCA4P78363 2273 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 DICER1Q9UPY3 1922 aaKnown RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 DPRXA6NFQ7 191 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 ZNF362Q5T0B9 420 aaPredicted RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 PARD6GQ9BYG4 376 aaPredicted RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 LINC00527Q9UJ94 153 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 TRAV14DV4A0A0A6YYC5 116 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 SRP19P09132 144 aaKnown RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 IGFBP3P17936 291 aaPredicted RBP9.6□□□□□ -0.87
USP53-201ENST00000274030 ASIPP42127 132 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 CTAG1AP78358 180 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 GGACTQ9BVM4 153 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 LINC00312Q9Y6C7 94 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 OR11H12B2RN74 326 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 OR11H1Q8NG94 326 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 OR11H2Q8NH07 326 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 TOMM7Q9P0U1 55 aa9.6□□□□□ -0.87
USP53-201ENST00000274030 NUTF2P61970 127 aaKnown RBP9.59□□□□□ -0.87
USP53-201ENST00000274030 CFHR1Q03591 330 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 ZNF525Q8N782 197 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 FLVCR1-AS1Q8TAF5 88 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 Q9H3A6 140 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 SPRR3Q9UBC9 169 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 SCN4AP35499 1836 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 FER1L5A0AVI2 2057 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 RGPD3A6NKT7 1758 aaPredicted RBP9.59□□□□□ -0.87
USP53-201ENST00000274030 ATRAIDQ6UW56 229 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 WFDC12Q8WWY7 111 aa9.59□□□□□ -0.87
USP53-201ENST00000274030 RNASE7Q9H1E1 156 aaKnown RBP9.59□□□□□ -0.87
USP53-201ENST00000274030 YAE1D1Q9NRH1 226 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms