RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CELA3BP08861 270 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 SRSF3P84103 164 aaKnown RBP9.03□□□□□ -0.96
CD44-201ENST00000263398 CFHR1Q03591 330 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 COL4A6Q14031 1691 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 CADP27708 2225 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 TRAV24A0A0B4J272 114 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 RBFOX2O43251 390 aaKnown RBP eCLIP9.03□□□□□ -0.96
CD44-201ENST00000263398 ZNF497Q6ZNH5 498 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 OR4D5Q8NGN0 318 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 OR52E5Q8NH55 327 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 FBXL15Q9H469 300 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 IGHV3-35A0A0C4DH35 117 aa9.02□□□□□ -0.96
CD44-201ENST00000263398 COX6CP09669 75 aa9.02□□□□□ -0.96
CD44-201ENST00000263398 FAM166AQ6J272 317 aa9.02□□□□□ -0.96
CD44-201ENST00000263398 FAM53AQ6NSI3 398 aaPredicted RBP9.02□□□□□ -0.96
CD44-201ENST00000263398 KCNS1Q96KK3 526 aa9.02□□□□□ -0.96
CD44-201ENST00000263398 AUP1Q9Y679 476 aa9.02□□□□□ -0.96
CD44-201ENST00000263398 ATP5G2Q06055 141 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 ZFP36L1Q07352 338 aaKnown RBP9.02□□□□□ -0.97
CD44-201ENST00000263398 ZIC4Q8N9L1 334 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 RAB37Q96AX2 223 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 IMMP2LQ96T52 175 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 PMCHL2Q9BQD1 86 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 DEPPQ9NTK1 212 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 TBL2Q9Y4P3 447 aaKnown RBP9.02□□□□□ -0.97
CD44-201ENST00000263398 SOX21Q9Y651 276 aaPredicted RBP9.02□□□□□ -0.97
CD44-201ENST00000263398 CACNA1BQ00975 2339 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 NOTCH3Q9UM47 2321 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 THSD7BQ9C0I4 1608 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 IGKV1-12A0A0C4DH73 117 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 LOC107984156A0A0G2JMH3 177 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 A0A1B0GUT8 65 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 IGKV1D-12P01611 117 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 PLP1P60201 277 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 CSRP2Q16527 193 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 TMEM136Q6ZRR5 245 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 C17orf82Q86X59 251 aaPredicted RBP9.02□□□□□ -0.97
CD44-201ENST00000263398 ARL17AQ8IVW1 177 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 EEF1AKMT3Q96AZ1 226 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 MESP1Q9BRJ9 268 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 MIEN1Q9BRT3 115 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 PARD6GQ9BYG4 376 aaPredicted RBP9.02□□□□□ -0.97
CD44-201ENST00000263398 SCN8AQ9UQD0 1980 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 MPDZO75970 2070 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 GPX1P07203 203 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 CTAG1AP78358 180 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 MIR17HGQ75NE6 70 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 C9orf106Q8NAJ2 232 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 DDB2Q92466 427 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 HIST1H4GQ99525 98 aa9.02□□□□□ -0.97
CD44-201ENST00000263398 DOCK8Q8NF50 2099 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 FOXH1O75593 365 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 PI4KAP42356 2102 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 CCL20P78556 96 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 C21orf62-AS1Q17RA5 79 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 MRPL20Q9BYC9 149 aaKnown RBP9.01□□□□□ -0.97
CD44-201ENST00000263398 COL6A6A6NMZ7 2263 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 A0A1B0GV90 55 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 C17orf100A8MU93 164 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 SUPT4H1P63272 117 aaKnown RBP9.01□□□□□ -0.97
CD44-201ENST00000263398 TRBV20OR9-2A0A075B6H5 130 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 IGKV3D-15A0A087WSY6 115 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 CD5P06127 495 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 HERPUD1Q15011 391 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 WDR82Q6UXN9 313 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 MBD3L1Q8WWY6 194 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 GPR82Q96P67 336 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 KIAA2026Q5HYC2 2103 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 TTC28Q96AY4 2481 aa9.01□□□□□ -0.97
CD44-201ENST00000263398 FOXI3A8MTJ6 420 aaPredicted RBP9□□□□□ -0.97
CD44-201ENST00000263398 UPK2O00526 184 aa9□□□□□ -0.97
CD44-201ENST00000263398 MORN2Q502X0 79 aa9□□□□□ -0.97
CD44-201ENST00000263398 ZNF324BQ6AW86 544 aaPredicted RBP9□□□□□ -0.97
CD44-201ENST00000263398 SMIM12Q96EX1 92 aa9□□□□□ -0.97
CD44-201ENST00000263398 WDR83OSQ9Y284 106 aa9□□□□□ -0.97
CD44-201ENST00000263398 C9orf172C9J069 976 aa9□□□□□ -0.97
CD44-201ENST00000263398 CRXO43186 299 aaPredicted RBP9□□□□□ -0.97
CD44-201ENST00000263398 GATA2P23769 480 aaPredicted RBP9□□□□□ -0.97
CD44-201ENST00000263398 SRSF7Q16629 238 aaKnown RBP eCLIP9□□□□□ -0.97
CD44-201ENST00000263398 TEX45Q8NA69 505 aa9□□□□□ -0.97
CD44-201ENST00000263398 LINC01560Q8TB33 94 aa9□□□□□ -0.97
CD44-201ENST00000263398 TMEM170AQ8WVE7 144 aa9□□□□□ -0.97
CD44-201ENST00000263398 ZNF414Q96IQ9 312 aa9□□□□□ -0.97
CD44-201ENST00000263398 C15orf61A6NNL5 157 aa9□□□□□ -0.97
CD44-201ENST00000263398 CD55P08174 381 aa9□□□□□ -0.97
CD44-201ENST00000263398 RNFT1Q5M7Z0 435 aa9□□□□□ -0.97
CD44-201ENST00000263398 DNLZQ5SXM8 178 aa9□□□□□ -0.97
CD44-201ENST00000263398 FGFBP3Q8TAT2 258 aa9□□□□□ -0.97
CD44-201ENST00000263398 FAM57AQ8TBR7 257 aa9□□□□□ -0.97
CD44-201ENST00000263398 NABP1Q96AH0 204 aa9□□□□□ -0.97
CD44-201ENST00000263398 C21orf62Q9NYP8 219 aa9□□□□□ -0.97
CD44-201ENST00000263398 SAA1P0DJI8 122 aaPredicted RBP9□□□□□ -0.97
CD44-201ENST00000263398 TSPOP30536 169 aa9□□□□□ -0.97
CD44-201ENST00000263398 DLX6P56179 175 aa9□□□□□ -0.97
CD44-201ENST00000263398 Q6AWC8 147 aa9□□□□□ -0.97
CD44-201ENST00000263398 KIR2DL4Q99706 377 aa9□□□□□ -0.97
CD44-201ENST00000263398 WFDC1Q9HC57 220 aa9□□□□□ -0.97
CD44-201ENST00000263398 C7orf71A4D174 169 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 NAPSAO96009 420 aa8.99□□□□□ -0.97
CD44-201ENST00000263398 WNT10AQ9GZT5 417 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms