RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FKBP11Q9NYL4 201 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 VWC2LB2RUY7 222 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 SPINT2O43291 252 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 KITLGP21583 273 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 PSG5Q15238 335 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 LURAP1Q96LR2 239 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 FER1L6-AS2Q96M78 137 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 FAM215AQ9Y5M1 114 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 SLC25A15Q9Y619 301 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 TMEM210A6NLX4 147 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 TM4SF5O14894 197 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 HPRT1P00492 218 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 TAS2R60P59551 318 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 IQCJQ1A5X6 159 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 DEFB109BQ30KR1 87 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 TPTE2P1Q5T6R2 138 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 PRR7Q8TB68 274 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 VN1R17PQ8TDU5 208 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 FBXL7Q9UJT9 491 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 V9GYV3 84 aa8.71□□□□□ -1.01
USP28-201ENST00000003302 F6UZH7 168 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 IRF2P14316 349 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 CENPWQ5EE01 88 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 MRPL54Q6P161 138 aaKnown RBP8.71□□□□□ -1.02
USP28-201ENST00000003302 HSPB9Q9BQS6 159 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 PARD6AQ9NPB6 346 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 IGLV2-8P01709 118 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 ZNF90Q03938 601 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 KIR3DL3Q8N743 410 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 MS4A10Q96PG2 267 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 S1PR3Q99500 378 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 MRPL18Q9H0U6 180 aaKnown RBP8.71□□□□□ -1.02
USP28-201ENST00000003302 GSX1Q9H4S2 264 aaPredicted RBP8.71□□□□□ -1.02
USP28-201ENST00000003302 GCM1Q9NP62 436 aa8.71□□□□□ -1.02
USP28-201ENST00000003302 CGB1A6NKQ9 187 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 CT45A6P0DMU7 189 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 CT45A5P0DMU8 189 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 CT45A7P0DMV0 189 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 OPRK1P41145 380 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 ATP6V1FQ16864 119 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 TOMM20LQ6UXN7 152 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 CISD2Q8N5K1 135 aaKnown RBP8.7□□□□□ -1.02
USP28-201ENST00000003302 Q8N976 141 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 SLC24A4Q8NFF2 622 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 OR10G8Q8NGN5 311 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 SNIP1Q8TAD8 396 aaKnown RBP8.7□□□□□ -1.02
USP28-201ENST00000003302 C15orf61A6NNL5 157 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 IGHG3P01860 377 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 NPY1RP25929 384 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 HTD2P86397 168 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 PRR20EP86478 221 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 PRR20CP86479 221 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 PRR20DP86480 221 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 PRR20BP86481 221 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 PRR20AP86496 221 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 GDF5OSQ5U4N7 250 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 ANAPC16Q96DE5 110 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 EAF1Q96JC9 268 aaPredicted RBP8.7□□□□□ -1.02
USP28-201ENST00000003302 GNB4Q9HAV0 340 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 SH3BGRL2Q9UJC5 107 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 IGHV3-72A0A0B4J1Y9 119 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 SNURFLB1AK76 121 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 M0QZ24 198 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 CORTO00230 105 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 CHRNB4P30926 498 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 LCN12Q6JVE5 192 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 ZNF841Q6ZN19 808 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 FNDC4Q9H6D8 234 aaPredicted RBP8.7□□□□□ -1.02
USP28-201ENST00000003302 TMEM14BQ9NUH8 114 aa8.7□□□□□ -1.02
USP28-201ENST00000003302 SUMO1P63165 101 aaKnown RBP8.69□□□□□ -1.02
USP28-201ENST00000003302 AARDQ4LEZ3 155 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 ZBTB34Q8NCN2 500 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 ZNF439Q8NDP4 499 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 KCNIP2Q9NS61 270 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 ZNF705FA8MVS1 300 aaPredicted RBP8.69□□□□□ -1.02
USP28-201ENST00000003302 VENTXO95231 258 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 ZNF705DP0CH99 300 aaPredicted RBP8.69□□□□□ -1.02
USP28-201ENST00000003302 ZNF705BP0CI00 300 aaPredicted RBP8.69□□□□□ -1.02
USP28-201ENST00000003302 NEU1Q99519 415 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 MBP02144 154 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 HOXC12P31275 282 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 CCKARP32238 428 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 MMD2Q8IY49 270 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 TMEM178AQ8NBL3 297 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 TMEM18Q96B42 140 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 CIB3Q96Q77 187 aaPredicted RBP8.69□□□□□ -1.02
USP28-201ENST00000003302 SSBP4Q9BWG4 385 aaPredicted RBP8.69□□□□□ -1.02
USP28-201ENST00000003302 ASCL3Q9NQ33 180 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 NAGKQ9UJ70 344 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 LHBP01229 141 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 NPSP0C0P6 89 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 OR10J1P30954 320 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 ERVFC1-1P60608 527 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 GNG5P63218 68 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 ACY3Q96HD9 319 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 NABP2Q9BQ15 211 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 C2orf88Q9BSF0 95 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 SPG11Q96JI7 2443 aa8.69□□□□□ -1.02
USP28-201ENST00000003302 MDFIC2A0A1B0GVS7 189 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 SH2D7A6NKC9 451 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms