RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 TAF1LQ8IZX4 1826 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV3OR16-13A0A075B7E8 117 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV3-74A0A0B4J1X5 117 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV4-39P01824 125 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CD5P06127 495 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CRYBB3P26998 211 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 SRIP30626 198 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 Q6AWC8 147 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 ZNF501Q96CX3 271 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 C18orf15Q96N68 181 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CBLN4Q9NTU7 201 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 E9PQ18 207 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 INS-IGF2F8WCM5 200 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 SPINT1O43278 529 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 INSP01308 110 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 FHITP49789 147 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 C3orf36Q3SXR2 165 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 Q6ZT83 130 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 NPIPB3Q92617 1050 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 A0A1B0GV72 72 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 A0A1W2PP11 408 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 OTX1P32242 354 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 KIAA1644Q3SXP7 199 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 TTC9CQ8N5M4 171 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 FDCSPQ8NFU4 85 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 PEF1Q9UBV8 284 aaKnown RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 LAMTOR3Q9UHA4 124 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 ALS2Q96Q42 1657 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 TRAV14DV4A0A0A6YYC5 116 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 LOC390937A0A1W2PQ73 354 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 TRGC2P03986 189 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 COX5BP10606 129 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 AGAP20933 346 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 CA7P43166 264 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 ZNF345Q14585 488 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 ASCL2Q99929 193 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 SBF1O95248 1867 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 PGLYRP1O75594 196 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 VAX1Q5SQQ9 334 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 SUMO4Q6EEV6 95 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 ST6GAL2Q96JF0 529 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 HS3ST3B1Q9Y662 390 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 NGFRP08138 427 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 LGALS1P09382 135 aaKnown RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 CGB7P0DN87 165 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 NABP2Q9BQ15 211 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 HRKO00198 91 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 HSPB1P04792 205 aaKnown RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 VSIG8P0DPA2 414 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 ZXDCQ2QGD7 858 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 GP6Q9HCN6 339 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 SPTA1P02549 2419 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 A0A1B0GUT8 65 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 FAM166AQ6J272 317 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 FER1L6-AS1Q8NA97 138 aa4.73□□□□□ -1.65
SCN1A-209ENST00000635750 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-209ENST00000635750 TRAV8-2A0A0B4J237 113 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 NBEAP1P0C6P0 100 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 RBMY1FQ15415 496 aaKnown RBP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 RIPPLY2Q5TAB7 128 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 NR2C2APQ86WQ0 139 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 OSR1Q8TAX0 266 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 GATAD1Q8WUU5 269 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 C1QTNF4Q9BXJ3 329 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SPTBN1Q01082 2364 aaKnown RBP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SCN7AQ01118 1682 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 CD28P10747 220 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 TMEM91Q6ZNR0 172 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 OR1P1Q8NH06 330 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 FBXL15Q9H469 300 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SEPSECSQ9HD40 501 aaKnown RBP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 TCF19Q9Y242 345 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 TRAV9-2A0A087WT02 112 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 A0A1B0GWB2 263 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV3-48P01763 117 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 ZP1P60852 638 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SRSF7Q16629 238 aaKnown RBP eCLIP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 ZNF562Q6V9R5 426 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 GLMPQ8WWB7 406 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 OR5P3Q8WZ94 311 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SLC50A1Q9BRV3 221 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 ANAPC10Q9UM13 185 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 HMX2A2RU54 273 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 WNT2P09544 360 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 ORMDL3Q8N138 153 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 OVOL2Q9BRP0 275 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SIRT4Q9Y6E7 314 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 H3BTX0 84 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 P2RY4P51582 365 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 CENPWQ5EE01 88 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 TMEM252Q8N6L7 170 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 GATD1Q8NB37 220 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 DLX4Q92988 240 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-209ENST00000635750 LRRK1Q38SD2 2015 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 FREM3P0C091 2139 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 NCKAP5O14513 1909 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 SPTBN2O15020 2390 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 VWC2LB2RUY7 222 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 J3QW42 95 aa4.72□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV3-11P01762 117 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms