RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZNF491Q8N8L2 437 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 OR5B3Q8NH48 314 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 LHFPL5Q8TAF8 219 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 MYOZ3Q8TDC0 251 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 C4orf3Q8WVX3 66 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 UBE2E2Q96LR5 201 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 OR5B12Q96R08 314 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 GNB4Q9HAV0 340 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 TMEM14BQ9NUH8 114 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 ZNF257Q9Y2Q1 563 aa14.07□□□□□ -0.16
CLN3-239ENST00000628023 TEX50A0A1B0GTY4 177 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 C13orf42A0A1B0GVH6 325 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 A0A1B0GW64 132 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 NPIPB5A8MRT5 1133 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 UPK1BO75841 260 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 DHFRP00374 187 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 REG1AP05451 166 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 AREGP15514 252 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 SUPT4H1P63272 117 aaKnown RBP14.06□□□□□ -0.16
CLN3-239ENST00000628023 MZT2BQ6NZ67 158 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 FAM219AQ8IW50 185 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 SELENOHQ8IZQ5 122 aaKnown RBP14.06□□□□□ -0.16
CLN3-239ENST00000628023 LGI3Q8N145 548 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 TTC9CQ8N5M4 171 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 IL22RA2Q969J5 263 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 TMEM56Q96MV1 263 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 SRSF8Q9BRL6 282 aaKnown RBP14.06□□□□□ -0.16
CLN3-239ENST00000628023 PDCD10Q9BUL8 212 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 FLVCR2Q9UPI3 526 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 TMEM56-RWDD3S4R434 201 aa14.06□□□□□ -0.16
CLN3-239ENST00000628023 PIGBOS1A0A0B4J2F0 54 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 CGB1A6NKQ9 187 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 IGHV3-11P01762 117 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 PRH1P02810 166 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 DEFA4P12838 97 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 PSMB6P28072 239 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 RAB25P57735 213 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 DEFA5Q01523 94 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 PPP1R1AQ13522 171 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 DEFB136Q30KP8 78 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 KPRPQ5T749 579 aaPredicted RBP14.05□□□□□ -0.16
CLN3-239ENST00000628023 SAMD5Q5TGI4 173 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 HSD17B13Q7Z5P4 300 aaPredicted RBP14.05□□□□□ -0.16
CLN3-239ENST00000628023 MRPL41Q8IXM3 137 aaKnown RBP14.05□□□□□ -0.16
CLN3-239ENST00000628023 SLC35G3Q8N808 338 aa14.05□□□□□ -0.16
CLN3-239ENST00000628023 LSM10Q969L4 123 aaKnown RBP14.05□□□□□ -0.16
CLN3-239ENST00000628023 NOTCH3Q9UM47 2321 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 A0A0G2JLM5 398 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 IGLC7A0M8Q6 106 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 DBX1A6NMT0 343 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 UBE2MP61081 183 aaKnown RBP14.04□□□□□ -0.16
CLN3-239ENST00000628023 KIAA0141Q14154 515 aaPredicted RBP14.04□□□□□ -0.16
CLN3-239ENST00000628023 OR10W1Q8NGF6 305 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 DUX3Q96PT4 197 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 C20orf85Q9H1P6 137 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 NDUFA4L2Q9NRX3 87 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 TBC1D24Q9ULP9 559 aa14.04□□□□□ -0.16
CLN3-239ENST00000628023 PRKDCP78527 4128 aaKnown RBP14.04□□□□□ -0.16
CLN3-239ENST00000628023 A0A0G2JRQ6 117 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 FAM240BA0A1B0GVZ2 78 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 CCL24O00175 119 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 SFT2D2O95562 160 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 IFNA17P01571 189 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 HLA-AP01891 365 aaKnown RBP14.03□□□□□ -0.16
CLN3-239ENST00000628023 LGALS1P09382 135 aaKnown RBP14.03□□□□□ -0.16
CLN3-239ENST00000628023 P0C879 139 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 OR13C7P0DN81 318 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 ANXA7P20073 488 aaKnown RBP14.03□□□□□ -0.16
CLN3-239ENST00000628023 RHOGP84095 191 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 ASAH1Q13510 395 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 C4orf46Q504U0 113 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 C19orf35Q6ZS72 473 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 USMG5Q96IX5 58 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 PLEKHA3Q9HB20 300 aa14.03□□□□□ -0.16
CLN3-239ENST00000628023 TRAV6A0A075B6T7 132 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 A0A0B4J293 547 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 A0A0B4J2A0 478 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 FAM223BA6NKX1 122 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 CYB5BO43169 146 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 ST8SIA3O43173 380 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 OR2J3O76001 311 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 BRI3O95415 125 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 CRYGCP07315 174 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 CTRB1P17538 263 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 CD33P20138 364 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 MYCNOSP40205 109 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 HSPE1P61604 102 aaKnown RBP14.02□□□□□ -0.17
CLN3-239ENST00000628023 CTRB2Q6GPI1 263 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 ZNF429Q86V71 674 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 FAM223AQ8IWN6 122 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 ENKURQ8TC29 256 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 GPR146Q96CH1 333 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 RAX2Q96IS3 184 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 ALX4Q9H161 411 aaPredicted RBP14.02□□□□□ -0.17
CLN3-239ENST00000628023 CACNG5Q9UF02 275 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 SHPKQ9UHJ6 478 aa14.02□□□□□ -0.17
CLN3-239ENST00000628023 TCRBP04435 133 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 OR4E1P0C645 316 aa14.01□□□□□ -0.17
CLN3-239ENST00000628023 HOXA1P49639 335 aaPredicted RBP14.01□□□□□ -0.17
CLN3-239ENST00000628023 DEFA1P59665 94 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms