RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PLSCR4Q9NRQ2 329 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 SNRPEP62304 92 aaKnown RBP17.21■□□□□ 0.35
UPF1-207ENST00000599848 VWCEQ96DN2 955 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 ZNF257Q9Y2Q1 563 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 DLEC1Q9Y238 1755 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 IGHV3-35A0A0C4DH35 117 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 GTF3AQ92664 365 aaKnown RBP17.21■□□□□ 0.35
UPF1-207ENST00000599848 OR11H12B2RN74 326 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 ZNF672Q499Z4 452 aaPredicted RBP17.21■□□□□ 0.35
UPF1-207ENST00000599848 OR11H1Q8NG94 326 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 OR4D5Q8NGN0 318 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 OR11H2Q8NH07 326 aa17.21■□□□□ 0.35
UPF1-207ENST00000599848 TRAV21A0A0B4J279 112 aa17.21■□□□□ 0.34
UPF1-207ENST00000599848 MSGN1A6NI15 193 aa17.21■□□□□ 0.34
UPF1-207ENST00000599848 HBBP68871 147 aa17.21■□□□□ 0.34
UPF1-207ENST00000599848 TRAV41A0A0B4J266 112 aa17.2■□□□□ 0.34
UPF1-207ENST00000599848 SIPA1L3O60292 1781 aaPredicted RBP17.2■□□□□ 0.34
UPF1-207ENST00000599848 CRYBB3P26998 211 aa17.2■□□□□ 0.34
UPF1-207ENST00000599848 COL5A3P25940 1745 aaPredicted RBP17.2■□□□□ 0.34
UPF1-207ENST00000599848 C4orf51C9J302 202 aa17.2■□□□□ 0.34
UPF1-207ENST00000599848 M0R1W7 72 aa17.2■□□□□ 0.34
UPF1-207ENST00000599848 M0R381 172 aa17.2■□□□□ 0.34
UPF1-207ENST00000599848 TMEM187Q14656 261 aa17.2■□□□□ 0.34
UPF1-207ENST00000599848 RHOGP84095 191 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 LINC01590Q5TEZ4 76 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 EGR4Q05215 589 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 WDR82Q6UXN9 313 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 IGHV3OR16-13A0A075B7E8 117 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 IGHV3-74A0A0B4J1X5 117 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 HLA-DQB1P01920 261 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 ASPHD2Q6ICH7 369 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 OR9G4Q8NGQ1 327 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 FAM131CQ96AQ9 280 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 MCRIP2Q9BUT9 160 aaKnown RBP17.19■□□□□ 0.34
UPF1-207ENST00000599848 SPSB3Q6PJ21 355 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 OR52E5Q8NH55 327 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 ADAMTS7Q9UKP4 1686 aa17.19■□□□□ 0.34
UPF1-207ENST00000599848 SIGLEC5O15389 551 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 F12P00748 615 aaPredicted RBP17.18■□□□□ 0.34
UPF1-207ENST00000599848 FOLR2P14207 255 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 HOXA5P20719 270 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 OR5AN1Q8NGI8 311 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 TRIOBPQ9H2D6 2365 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 TDRD15B5MCY1 1934 aaKnown RBP17.18■□□□□ 0.34
UPF1-207ENST00000599848 LINC00862A6NCI5 91 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 EIF3GO75821 320 aaKnown RBP eCLIP17.18■□□□□ 0.34
UPF1-207ENST00000599848 LINC00271P0C7V0 271 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 SVILO95425 2214 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 OTORQ9NRC9 128 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 TBL2Q9Y4P3 447 aaKnown RBP17.18■□□□□ 0.34
UPF1-207ENST00000599848 MYO5AQ9Y4I1 1855 aaKnown RBP17.18■□□□□ 0.34
UPF1-207ENST00000599848 UPK2O00526 184 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 CTSBP07858 339 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 NRN1Q9NPD7 142 aa17.18■□□□□ 0.34
UPF1-207ENST00000599848 LOC107984156A0A0G2JMH3 177 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 HAPLN4Q86UW8 402 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 ARL17AQ8IVW1 177 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 FABP2P12104 132 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 RNASE4P34096 147 aaKnown RBP17.17■□□□□ 0.34
UPF1-207ENST00000599848 PAX8Q06710 450 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 SCN3AQ9NY46 2000 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 VENTXO95231 258 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 FAM219BQ5XKK7 198 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 NPDC1Q9NQX5 325 aaPredicted RBP17.17■□□□□ 0.34
UPF1-207ENST00000599848 VKORC1L1Q8N0U8 176 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 AHCTF1Q8WYP5 2266 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 FAM90A9PA6NNJ1 464 aa17.17■□□□□ 0.34
UPF1-207ENST00000599848 ASXL3Q9C0F0 2248 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 SEC16AO15027 2179 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 SOD3P08294 240 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 SNRPCP09234 159 aaKnown RBP17.16■□□□□ 0.34
UPF1-207ENST00000599848 SP5Q6BEB4 398 aaPredicted RBP17.16■□□□□ 0.34
UPF1-207ENST00000599848 NXT2Q9NPJ8 142 aaKnown RBP17.16■□□□□ 0.34
UPF1-207ENST00000599848 IGHV1-18A0A0C4DH31 117 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 A0A0G2JMM0 328 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 A0A1W2PPB8 328 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 A0A1W2PRS3 328 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 KIR3DP1A8MWS1 328 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 H7C2G1 150 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 IGHV3-23P01764 117 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 PQLC2LA1A4F0 135 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 FABP5P3A8MUU1 101 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 DNLZQ5SXM8 178 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 CXorf65A6NEN9 183 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 PSCAO43653 123 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 C2orf68Q2NKX9 166 aa17.16■□□□□ 0.34
UPF1-207ENST00000599848 IGHV3-49A0A0A0MS15 119 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 EREGO14944 169 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 TMEM170BQ5T4T1 132 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 USMG5Q96IX5 58 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 AURKAIP1Q9NWT8 199 aaPredicted RBP17.15■□□□□ 0.34
UPF1-207ENST00000599848 ZNF660Q6AZW8 331 aaPredicted RBP17.15■□□□□ 0.34
UPF1-207ENST00000599848 TEX38Q6PEX7 206 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 RFLNBQ8N5W9 214 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 CD200R1LQ6Q8B3 271 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 MARVELD3Q96A59 401 aa17.15■□□□□ 0.34
UPF1-207ENST00000599848 RRHO14718 337 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 UCP1P25874 307 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 LY75O60449 1722 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 COL4A5P29400 1685 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms