RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PITPNC1Q9UKF7 332 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 VPREB3Q9UKI3 123 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 FOXA2Q9Y261 457 aaPredicted RBP7.45□□□□□ -1.22
TRIM28-208ENST00000597172 MOB4Q9Y3A3 225 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 OR51B2Q9Y5P1 312 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 POMT1Q9Y6A1 747 aa7.45□□□□□ -1.22
TRIM28-208ENST00000597172 IGHV7-81A0A0B4J1V7 117 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 LINC01548A6NM66 108 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 G3V3Q6 166 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 H0YIZ8 118 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 FGF16O43320 207 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 CCNKO75909 580 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 SNAPC5O75971 98 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 NXPH3O95157 252 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 CA2P00918 260 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 MBPP02686 304 aaPredicted RBP7.44□□□□□ -1.22
TRIM28-208ENST00000597172 OPN1MWP04001 364 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 FGF2P09038 288 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 GIPP09681 153 aaPredicted RBP7.44□□□□□ -1.22
TRIM28-208ENST00000597172 OPN1MW2P0DN77 364 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 OPN1MW3P0DN78 364 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 HSPE1P61604 102 aaKnown RBP7.44□□□□□ -1.22
TRIM28-208ENST00000597172 CX3CL1P78423 397 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 PLGLAQ15195 96 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 C10orf55Q5SWW7 151 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 THOC7Q6I9Y2 204 aaKnown RBP7.44□□□□□ -1.22
TRIM28-208ENST00000597172 ZNF562Q6V9R5 426 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 Q6ZS46 218 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 C16orf82Q7Z2V1 217 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 MMD2Q8IY49 270 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 OR4F5Q8NH21 305 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 OR52E5Q8NH55 327 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 OR1S1Q8NH92 325 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 FYTTD1Q96QD9 318 aaKnown RBP7.44□□□□□ -1.22
TRIM28-208ENST00000597172 SPIN2AQ99865 258 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 RASL11BQ9BPW5 248 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 SPIN2BQ9BPZ2 258 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 HSPB9Q9BQS6 159 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 PDCD10Q9BUL8 212 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 NDUFA4L2Q9NRX3 87 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 HSPB7Q9UBY9 170 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 PRNDQ9UKY0 176 aa7.44□□□□□ -1.22
TRIM28-208ENST00000597172 TRAV14DV4A0A0A6YYC5 116 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 BTBD17A6NE02 478 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 C3orf84H3BNL1 204 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 SMLR1H3BR10 107 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 CLDN34H7C241 214 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 K7EPK0 472 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 RBMXL2O75526 392 aaKnown RBP7.43□□□□□ -1.22
TRIM28-208ENST00000597172 HLA-DRB1P01911 266 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 EGR2P11161 476 aaPredicted RBP7.43□□□□□ -1.22
TRIM28-208ENST00000597172 MAS1LP35410 378 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 NKX2-1P43699 371 aaPredicted RBP7.43□□□□□ -1.22
TRIM28-208ENST00000597172 KRTAP10-3P60369 221 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 SPCS3P61009 180 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 POLR2GP62487 172 aaKnown RBP eCLIP7.43□□□□□ -1.22
TRIM28-208ENST00000597172 CYCSP99999 105 aaKnown RBP7.43□□□□□ -1.22
TRIM28-208ENST00000597172 TNFRSF9Q07011 255 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 RAB32Q13637 225 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 SPINK9Q5DT21 86 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 RNF126Q9BV68 326 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 MAGT1Q9H0U3 335 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 RBKSQ9H477 322 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 C11orf1Q9H5F2 150 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 AURKAIP1Q9NWT8 199 aaPredicted RBP7.43□□□□□ -1.22
TRIM28-208ENST00000597172 FKBP11Q9NYL4 201 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 ZNF257Q9Y2Q1 563 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 FBXO7Q9Y3I1 522 aa7.43□□□□□ -1.22
TRIM28-208ENST00000597172 MSGN1A6NI15 193 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 TEX22C9J3V5 150 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 FAM90A26D6RGX4 464 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 M0QZK8 103 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 GPR137BO60478 399 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 TMEM50AO95807 157 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 IFNA17P01571 189 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 PSMB6P28072 239 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 VDAC2P45880 294 aaPredicted RBP7.42□□□□□ -1.22
TRIM28-208ENST00000597172 PAX9P55771 341 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 RAP2BP61225 183 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 GNB1P62873 340 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 NDPQ00604 133 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 FXYD3Q14802 87 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 TNXAQ16473 311 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 OR10W1Q8NGF6 305 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 OR1L8Q8NGR8 309 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 OR5B3Q8NH48 314 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 PPP1R1CQ8WVI7 109 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 ASB13Q8WXK3 278 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 COMMD5Q9GZQ3 224 aa7.42□□□□□ -1.22
TRIM28-208ENST00000597172 RCL1Q9Y2P8 373 aaKnown RBP7.42□□□□□ -1.22
TRIM28-208ENST00000597172 CLPSL1A2RUU4 121 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 SYNGR2O43760 224 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 CNIH1O95406 144 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 MPC2O95563 127 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 SCGB1D2O95969 90 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 IGHG2P01859 326 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 RPL27AP46776 148 aaKnown RBP7.41□□□□□ -1.22
TRIM28-208ENST00000597172 PRCDQ00LT1 54 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 LRRC37A5PQ49AS3 106 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 ASPHD1Q5U4P2 390 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms