RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SNRPEP62304 92 aaKnown RBP6.09□□□□□ -1.43
SMAD4-209ENST00000589941 ASPHD1Q5U4P2 390 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 FAM185AQ8N0U4 392 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 Q8N7P7 452 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 Q8N9P0 234 aaPredicted RBP6.09□□□□□ -1.43
SMAD4-209ENST00000589941 GJC3Q8NFK1 279 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 C8orf46Q8TAG6 207 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 PIFOQ8TCI5 191 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 SECTM1Q8WVN6 248 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 MOB3AQ96BX8 217 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 CPNE2Q96FN4 548 aaPredicted RBP6.09□□□□□ -1.43
SMAD4-209ENST00000589941 BSCL2Q96G97 398 aaPredicted RBP6.09□□□□□ -1.43
SMAD4-209ENST00000589941 PGAM5Q96HS1 289 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 AKR1E2Q96JD6 320 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 GPER1Q99527 375 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 ZNF2Q9BSG1 426 aaPredicted RBP6.09□□□□□ -1.43
SMAD4-209ENST00000589941 PBDC1Q9BVG4 233 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 ST6GALNAC5Q9BVH7 336 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 SLC35B3Q9H1N7 401 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 C19orf12Q9NSK7 152 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 ONECUT1Q9UBC0 465 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 ZNF391Q9UJN7 358 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 POLR1DQ9Y2S0 133 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 DNAH2Q9P225 4427 aa6.09□□□□□ -1.43
SMAD4-209ENST00000589941 DNAH6Q9C0G6 4158 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 A0A1W2PPE3 182 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A10PA6NDY2 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A8PA6NJQ4 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A7PA6NKC0 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A22PA8MWA6 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A12PA8MX19 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A23PA8MXZ1 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 LINC00587B1AMM8 73 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 ZNF732B4DXR9 585 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 UMAD1C9J7I0 102 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 RHODO00212 210 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 MLNRO43193 412 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 SYNGR1O43759 233 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 PITX3O75364 302 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FABP1P07148 127 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A13PP0C7W8 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM90A24PP0C7X0 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 ZNF728P0DKX0 622 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 SLC2A1P11166 492 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 SRPXP78539 464 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 MRPS34P82930 218 aaKnown RBP6.08□□□□□ -1.44
SMAD4-209ENST00000589941 CLINT1Q14677 625 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 LRRC75BQ2VPJ9 315 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 PIK3CD-AS1Q5SR53 167 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 FAM27BQ5VT28 67 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 KRTAP5-3Q6L8H2 238 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 SPSB3Q6PJ21 355 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 HEPN1Q6WQI6 88 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 C18orf65Q6ZTR6 163 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 C6orf201Q7Z4U5 140 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 TMEM219Q86XT9 240 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 LGI3Q8N145 548 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 RPP25LQ8N5L8 163 aaKnown RBP6.08□□□□□ -1.44
SMAD4-209ENST00000589941 OR5AU1Q8NGC0 362 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 OR10G4Q8NGN3 311 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 C2CD4CQ8TF44 421 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 TNFRSF14Q92956 283 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 TMEM56Q96MV1 263 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 METTL9Q9H1A3 318 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 GSN-AS1Q9NRJ2 163 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 GSKIPQ9P0R6 139 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 KIAA1456Q9P272 454 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 RCL1Q9Y2P8 373 aaKnown RBP6.08□□□□□ -1.44
SMAD4-209ENST00000589941 KCNIP3Q9Y2W7 256 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 TMED3Q9Y3Q3 217 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 TMEM56-RWDD3S4R434 201 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 KIAA2026Q5HYC2 2103 aa6.08□□□□□ -1.44
SMAD4-209ENST00000589941 TRAV1-1A0A0B4J248 108 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 A0A1W2PPH5 198 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 TCRBV4S1A1TA0A5B7 111 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 OR6C6A6NF89 314 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 A6NLC8 198 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 M0R135 149 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 ST8SIA3O43173 380 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 SGCEO43556 437 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 GATCO43716 136 aaKnown RBP6.07□□□□□ -1.44
SMAD4-209ENST00000589941 NDUFS6O75380 124 aaKnown RBP6.07□□□□□ -1.44
SMAD4-209ENST00000589941 NDUFB8O95169 186 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 S100A9P06702 114 aaKnown RBP6.07□□□□□ -1.44
SMAD4-209ENST00000589941 PSG1P11464 419 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 ZNF32P17041 273 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 UCP1P25874 307 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 SULT1A1P50225 295 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 PPT1P50897 306 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 PIGPP57054 158 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 POLR2GP62487 172 aaKnown RBP eCLIP6.07□□□□□ -1.44
SMAD4-209ENST00000589941 ODF3L2Q3SX64 289 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 DGAT2L7PQ6IED9 249 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 HCP5Q6MZN7 132 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 DPPA3Q6W0C5 159 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 COMMD2Q86X83 199 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 ZFP82Q8N141 532 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 CCDC71LQ8N9Z2 235 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 MPLKIPQ8TAP9 179 aa6.07□□□□□ -1.44
SMAD4-209ENST00000589941 TCTEX1D2Q8WW35 142 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms