RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 C17orf51A8MQB3 221 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 ZNF705FA8MVS1 300 aaPredicted RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 K7EP13 123 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 RER1O15258 196 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 DHHO43323 396 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 PDE6DO43924 150 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 ZNF737O75373 536 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 CST7O76096 145 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TMEM50AO95807 157 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TOMM40O96008 361 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 PPBPP02775 128 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 CD55P08174 381 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 CYC1P08574 325 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 ZNF705DP0CH99 300 aaPredicted RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 ZNF705BP0CI00 300 aaPredicted RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 ANOS1P23352 680 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 CDKN1BP46527 198 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 RAB7AP51149 207 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 KLF3P57682 345 aaPredicted RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 FBXW4P57775 412 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 RPS20P60866 119 aaKnown RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 GNB2P62879 340 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 BSPH1Q075Z2 132 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 ENDOGQ14249 297 aaKnown RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 ATP6V1FQ16864 119 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 KRTAP27-1Q3LI81 207 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 MORN2Q502X0 79 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 CXorf66Q5JRM2 361 aaPredicted RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 LEMD1Q68G75 181 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 LCN15Q6UWW0 184 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 ZNF705AQ6ZN79 300 aaPredicted RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 MOB1BQ7L9L4 216 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 WFDC3Q8IUB2 231 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 SAXO1Q8IYX7 474 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TMEM217Q8N7C4 229 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 NECAP1Q8NC96 275 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 Q8NFD4 153 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 OR2D3Q8NGH3 330 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 MRGPRDQ8TDS7 321 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 OR5P3Q8WZ94 311 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 LHX4Q969G2 390 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TMEM54Q969K7 222 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 NABP1Q96AH0 204 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TMEM186Q96B77 213 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 DNAJA3Q96EY1 480 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 SDSLQ96GA7 329 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 SLC35E1Q96K37 410 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 OXGR1Q96P68 337 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 DIRC2Q96SL1 478 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 RNF2Q99496 336 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 PCGF1Q9BSM1 259 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 EMC6Q9BV81 110 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TMEM147Q9BVK8 224 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 ELOVL1Q9BW60 279 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 NCOR1P1Q9H4R4 102 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 DNAJC4Q9NNZ3 241 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 KCNIP2Q9NS61 270 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 TMEM106BQ9NUM4 274 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 LIN7CQ9NUP9 197 aaKnown RBP3.43□□□□□ -1.86
LIG3-211ENST00000588713 ZNF586Q9NXT0 402 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 SLC45A2Q9UMX9 530 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 RFNGQ9Y644 331 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 CSMD3Q7Z407 3707 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 DOCK7Q96N67 2140 aa3.43□□□□□ -1.86
LIG3-211ENST00000588713 STAB2Q8WWQ8 2551 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 SAA2-SAA4A0A096LPE2 208 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 ZNF816-ZNF321PA0A0X1KG74 233 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 UBE2L5PA0A1B0GUS4 154 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 hCG_38984A0A1B0GV85 526 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 C20orf202A1L168 122 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 SLC22A20A6NK97 555 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 B4DSR2 109 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 ZNF814B7Z6K7 855 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 H3BML4 177 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 SYNGR2O43760 224 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 CHST1O43916 411 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 PRKNO60260 465 aaPredicted RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 VAMP5O95183 116 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 NAPSAO96009 420 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 NRASP01111 189 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 KRASP01116 189 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 MT-ND6P03923 174 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 MMP7P09237 267 aaPredicted RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 F2RP25116 425 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 GNRHRP30968 328 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 CDAP32320 146 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 CTRLP40313 264 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 GUCA1AP43080 201 aaPredicted RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 GNG10P50151 68 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 FUT6P51993 359 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 FGF8P55075 233 aaPredicted RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 CLDN15P56746 228 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 RBX1P62877 108 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 RPL19P84098 196 aaKnown RBP3.42□□□□□ -1.86
LIG3-211ENST00000588713 SLC38A11Q08AI6 406 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 Q0VG73 95 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 OR5I1Q13606 314 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 VWC2Q2TAL6 325 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 PIGYQ3MUY2 71 aa3.42□□□□□ -1.86
LIG3-211ENST00000588713 COX19Q49B96 90 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms