RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CX3CL1P78423 397 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 PRCDQ00LT1 54 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 AANATQ16613 207 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 C19orf35Q6ZS72 473 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 C5orf56Q8N8D9 126 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 OR1L8Q8NGR8 309 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 OR4C12Q96R67 309 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 MFFQ9GZY8 342 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 PRDM13Q9H4Q3 707 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 PSENENQ9NZ42 101 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 HMSDA8MTL9 139 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 PET100P0DJ07 73 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 HOXA1P49639 335 aaPredicted RBP19.9■□□□□ 0.78
SHMT1-207ENST00000580002 TUSC1Q2TAM9 212 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 OR5B3Q8NH48 314 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 FKBP11Q9NYL4 201 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 FBXO7Q9Y3I1 522 aa19.9■□□□□ 0.78
SHMT1-207ENST00000580002 CAV2P51636 162 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 NHLH2Q02577 135 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 SPANXN5Q5MJ07 72 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 Q6ZS46 218 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 TMEM170AQ8WVE7 144 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 SMIM8Q96KF7 97 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 RAB40CQ96S21 281 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 ZFP57Q9NU63 452 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 C1RLQ9NZP8 487 aa19.89■□□□□ 0.77
SHMT1-207ENST00000580002 IGHV7-81A0A0B4J1V7 117 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 MED6O75586 246 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 REG1AP05451 166 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 FGF2P09038 288 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 RPL27AP46776 148 aaKnown RBP19.88■□□□□ 0.77
SHMT1-207ENST00000580002 WT1-ASQ06250 92 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 TMEM267Q0VDI3 215 aaPredicted RBP19.88■□□□□ 0.77
SHMT1-207ENST00000580002 FXYD3Q14802 87 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 OR2C3Q8N628 320 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 RASL11BQ9BPW5 248 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 HEYLQ9NQ87 328 aaPredicted RBP19.88■□□□□ 0.77
SHMT1-207ENST00000580002 MOB4Q9Y3A3 225 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 HSPB11Q9Y547 144 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 TEX22C9J3V5 150 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 ACTL6BO94805 426 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 CNIH1O95406 144 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 AREGP15514 252 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 RPL12P30050 165 aaKnown RBP19.88■□□□□ 0.77
SHMT1-207ENST00000580002 P2RY1P47900 373 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 OR8H1Q8NGG4 311 aa19.88■□□□□ 0.77
SHMT1-207ENST00000580002 SRSF12Q8WXF0 261 aaKnown RBP19.88■□□□□ 0.77
SHMT1-207ENST00000580002 LYRM2Q9NU23 88 aaPredicted RBP19.88■□□□□ 0.77
SHMT1-207ENST00000580002 CST7O76096 145 aa19.87■□□□□ 0.77
SHMT1-207ENST00000580002 EGR2P11161 476 aaPredicted RBP19.87■□□□□ 0.77
SHMT1-207ENST00000580002 BLCAPP62952 87 aa19.87■□□□□ 0.77
SHMT1-207ENST00000580002 TMEM252Q8N6L7 170 aa19.87■□□□□ 0.77
SHMT1-207ENST00000580002 PAIP2BQ9ULR5 123 aaKnown RBP19.87■□□□□ 0.77
SHMT1-207ENST00000580002 F8P00451 2351 aa19.87■□□□□ 0.77
SHMT1-207ENST00000580002 INAFM1C9JVW0 142 aa19.86■□□□□ 0.77
SHMT1-207ENST00000580002 FOSL1P15407 271 aa19.86■□□□□ 0.77
SHMT1-207ENST00000580002 PVALBP20472 110 aaPredicted RBP19.86■□□□□ 0.77
SHMT1-207ENST00000580002 ARL16Q0P5N6 197 aa19.86■□□□□ 0.77
SHMT1-207ENST00000580002 PLEKHA3Q9HB20 300 aa19.86■□□□□ 0.77
SHMT1-207ENST00000580002 TMEM160Q9NX00 188 aa19.86■□□□□ 0.77
SHMT1-207ENST00000580002 IGLC7A0M8Q6 106 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 METTL15P1P0C7V9 234 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 MAS1LP35410 378 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 ZNF562Q6V9R5 426 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 ACOT7LQ6ZUV0 252 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 HAPLN4Q86UW8 402 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 SSMEM1Q8WWF3 244 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 WSB1Q9Y6I7 421 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 C15orf62A8K5M9 175 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 HNF1AP20823 631 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 RPL23AP62750 156 aaKnown RBP19.85■□□□□ 0.77
SHMT1-207ENST00000580002 TEX29Q8N6K0 151 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 INO80EQ8NBZ0 244 aaPredicted RBP19.85■□□□□ 0.77
SHMT1-207ENST00000580002 AQP10Q96PS8 301 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 SMIM3Q9BZL3 60 aa19.85■□□□□ 0.77
SHMT1-207ENST00000580002 HLA-DRB1P01911 266 aa19.84■□□□□ 0.77
SHMT1-207ENST00000580002 OR13C7P0DN81 318 aa19.84■□□□□ 0.77
SHMT1-207ENST00000580002 EWSR1Q01844 656 aaKnown RBP eCLIP19.84■□□□□ 0.77
SHMT1-207ENST00000580002 ASPHD1Q5U4P2 390 aa19.84■□□□□ 0.77
SHMT1-207ENST00000580002 TMUB2Q71RG4 321 aa19.84■□□□□ 0.77
SHMT1-207ENST00000580002 TAF15Q92804 592 aaKnown RBP eCLIP19.84■□□□□ 0.77
SHMT1-207ENST00000580002 GPR137BO60478 399 aa19.83■□□□□ 0.77
SHMT1-207ENST00000580002 C9orf152Q5JTZ5 239 aa19.83■□□□□ 0.77
SHMT1-207ENST00000580002 TMEM217Q8N7C4 229 aa19.83■□□□□ 0.77
SHMT1-207ENST00000580002 HIPK2Q9H2X6 1198 aa19.83■□□□□ 0.77
SHMT1-207ENST00000580002 ENY2Q9NPA8 101 aa19.83■□□□□ 0.77
SHMT1-207ENST00000580002 PITPNC1Q9UKF7 332 aa19.83■□□□□ 0.77
SHMT1-207ENST00000580002 FGF16O43320 207 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 IFNA10P01566 189 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 TAS2R30P59541 319 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 TMEM14EPQ6UXP3 125 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 ARPC1AQ92747 370 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 WFDC1Q9HC57 220 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 ESM1Q9NQ30 184 aa19.83■□□□□ 0.76
SHMT1-207ENST00000580002 FN1P02751 2386 aaKnown RBP19.82■□□□□ 0.76
SHMT1-207ENST00000580002 TSC22D2O75157 780 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 KCNRGQ8N5I3 272 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 OR5R1Q8NH85 324 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 ABHD5Q8WTS1 349 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 CIB3Q96Q77 187 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms