RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CRCT1Q9UGL9 99 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 C14orf166Q9Y224 244 aaKnown RBP3.95□□□□□ -1.78
VPS53-219ENST00000576019 ARL5AQ9Y689 179 aa3.95□□□□□ -1.78
VPS53-219ENST00000576019 IGHV2-26A0A0B4J1V2 119 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 CLPSL1A2RUU4 121 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 A6NDX4 124 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 COX7A2P2O60397 106 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 GCM2O75603 506 aaPredicted RBP3.94□□□□□ -1.78
VPS53-219ENST00000576019 IGLV3-25P01717 112 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 IL6P05231 212 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 ATP5G1P05496 136 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 CD5P06127 495 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 MYL12AP19105 171 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 H2BFSP57053 126 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 SPCS3P61009 180 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 RAB2AP61019 212 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 IGLV3-21P80748 117 aaPredicted RBP3.94□□□□□ -1.78
VPS53-219ENST00000576019 MAPK14Q16539 360 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 Q8N9W7 124 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 OR10X1Q8NGY0 326 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 ZNRF2Q8NHG8 242 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 COQ8AQ8NI60 647 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 KCTD4Q8WVF5 259 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 TNFAIP8L1Q8WVP5 186 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 TMBIM1Q969X1 311 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 TLNRD1Q9H1K6 362 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 SND1-IT1Q9HBX3 110 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 FAM60AQ9NP50 221 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 ZNF223Q9UK11 482 aaPredicted RBP3.94□□□□□ -1.78
VPS53-219ENST00000576019 RAB26Q9ULW5 256 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 PRSS21Q9Y6M0 314 aa3.94□□□□□ -1.78
VPS53-219ENST00000576019 TET2Q6N021 2002 aaPredicted RBP3.94□□□□□ -1.78
VPS53-219ENST00000576019 IGLV11-55A0A075B6I3 123 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 IGLV3-12A0A075B6K2 115 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 A0A0U1RQV1 116 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 PINLYPA6NC86 204 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 LGALS9O00182 355 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 CHST10O43529 356 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 HBZP02008 142 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 OR4A8P0C604 315 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 UCHL3P15374 230 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 TGFBR2P37173 567 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 CDK9P50750 372 aaKnown RBP3.93□□□□□ -1.78
VPS53-219ENST00000576019 MP68P56378 58 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 MOGQ16653 247 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 TMEM241Q24JQ0 296 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 DEFB110Q30KQ9 67 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 SLC16A13Q7RTY0 426 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 ZNF429Q86V71 674 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 PDPNQ86YL7 162 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 LRRC25Q8N386 305 aaPredicted RBP3.93□□□□□ -1.78
VPS53-219ENST00000576019 SIGLECL1Q8N7X8 197 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 Q8WTZ3 238 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 ZNF414Q96IQ9 312 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 YPEL4Q96NS1 127 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 TTTY12Q9BZ98 90 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 MDFICQ9P1T7 246 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 HDGFL3Q9Y3E1 203 aa3.93□□□□□ -1.78
VPS53-219ENST00000576019 YTHDF2Q9Y5A9 579 aaKnown RBP3.93□□□□□ -1.78
VPS53-219ENST00000576019 IGLV1-50A0A075B6I6 118 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 IGKV3D-15A0A087WSY6 115 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 TEX50A0A1B0GTY4 177 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 A0A1B0GVX0 72 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 TMEM72A0PK05 275 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 CD300LBA8K4G0 201 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 C11orf94C9JXX5 98 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 M0QYV0 167 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 EIF1BO60739 113 aaKnown RBP3.92□□□□□ -1.78
VPS53-219ENST00000576019 IGHV3-11P01762 117 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 TLX1NBP0CAT3 122 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 SCGB1C2P0DMR2 95 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 IGHV1-8P0DP01 117 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 PSG2P11465 335 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 SLC6A1P30531 599 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 EIF1P41567 113 aaKnown RBP3.92□□□□□ -1.78
VPS53-219ENST00000576019 EFNA4P52798 201 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 PAFAH1B3Q15102 231 aaKnown RBP3.92□□□□□ -1.78
VPS53-219ENST00000576019 GLYATQ6IB77 296 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 NEGR1Q7Z3B1 354 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 SLC35G3Q8N808 338 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 ZNF680Q8NEM1 530 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 SCGB1C1Q8TD33 95 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 SLC35B4Q969S0 331 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 OR2A5Q96R48 311 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 HOPXQ9BPY8 73 aaPredicted RBP3.92□□□□□ -1.78
VPS53-219ENST00000576019 BPESC1Q9GZL8 116 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 SLC23A2Q9UGH3 650 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 PKD1P98161 4303 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 FAT1Q14517 4588 aa3.92□□□□□ -1.78
VPS53-219ENST00000576019 A0A087WUJ7 227 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 TRGV5A0A0B4J1U4 118 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 IGHV3-72A0A0B4J1Y9 119 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 LOC105371267A0A1B0GV96 52 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 A0A1B0GVY2 172 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 B4DSR2 109 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 CHP2O43745 196 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 LY6HO94772 140 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 SEC11BP0C7V7 166 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 GADD45AP24522 165 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 MSNP26038 577 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms