RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 RABAC1Q9UI14 185 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 RALYQ9UKM9 306 aaKnown RBP12.87□□□□□ -0.35
CIITA-204ENST00000570546 UQCRFS1P47985 274 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 FAM27E3Q08E93 113 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 SLC25A34Q6PIV7 304 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 C12orf54Q6X4T0 127 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 LOC102724200A0A096LPH7 203 aaPredicted RBP12.87□□□□□ -0.35
CIITA-204ENST00000570546 C1QTNF9BB2RNN3 333 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 C9orf172C9J069 976 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BKO60814 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BJP06899 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BOP23527 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BBP33778 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BDP58876 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BCP62807 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST2H2BEQ16778 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.87□□□□□ -0.35
CIITA-204ENST00000570546 WDR82Q6UXN9 313 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 TMEM170AQ8WVE7 144 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 ZCCHC14Q8WYQ9 949 aaKnown RBP12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BHQ93079 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BNQ99877 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HIST1H2BMQ99879 126 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 TRAV9-1A0A075B6T8 112 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 METTL26Q96S19 204 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 RNF115Q9Y4L5 304 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 HEATR5BQ9P2D3 2071 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 RPS20P60866 119 aaKnown RBP12.86□□□□□ -0.35
CIITA-204ENST00000570546 SRSF9Q13242 221 aaKnown RBP eCLIP12.86□□□□□ -0.35
CIITA-204ENST00000570546 UNQ5815/PRO19632Q6UWF5 114 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 WFDC3Q8IUB2 231 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 PNKDQ8N490 385 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 MBD3L1Q8WWY6 194 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 IGKV3D-15A0A087WSY6 115 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 NTN3O00634 580 aaPredicted RBP12.86□□□□□ -0.35
CIITA-204ENST00000570546 LOXL3P58215 753 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 COL25A1Q9BXS0 654 aaPredicted RBP12.86□□□□□ -0.35
CIITA-204ENST00000570546 PEX7O00628 323 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 YPEL1O60688 119 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 CFPP27918 469 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 ARF6P62330 175 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 C21orf62-AS1Q17RA5 79 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 YPEL2Q96QA6 119 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 MRPL20Q9BYC9 149 aaKnown RBP12.86□□□□□ -0.35
CIITA-204ENST00000570546 SAA2-SAA4A0A096LPE2 208 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 A0A1B0GW64 132 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 DPRXA6NFQ7 191 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 SAA2P0DJI9 122 aaPredicted RBP12.86□□□□□ -0.35
CIITA-204ENST00000570546 C16orf92Q96LL3 132 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 TMEM106BQ9NUM4 274 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 AP5S1Q9NUS5 200 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 TBL2Q9Y4P3 447 aaKnown RBP12.86□□□□□ -0.35
CIITA-204ENST00000570546 ID1P41134 155 aa12.86□□□□□ -0.35
CIITA-204ENST00000570546 RBFOX2O43251 390 aaKnown RBP eCLIP12.85□□□□□ -0.35
CIITA-204ENST00000570546 HLA-DRB1P01911 266 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 PSMB2P49721 201 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 TBR1Q16650 682 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 MORN2Q502X0 79 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 TMEM208Q9BTX3 173 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 CGB1A6NKQ9 187 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 C1QTNF9P0C862 333 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 GATA2P23769 480 aaPredicted RBP12.85□□□□□ -0.35
CIITA-204ENST00000570546 FOXG1P55316 489 aaPredicted RBP12.85□□□□□ -0.35
CIITA-204ENST00000570546 OR10AG1Q8NH19 301 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 SH2D7A6NKC9 451 aaPredicted RBP12.85□□□□□ -0.35
CIITA-204ENST00000570546 LYL1P12980 280 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 CTAG1AP78358 180 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 MAP1LC3AQ9H492 121 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 RP1L1Q8IWN7 2480 aaPredicted RBP12.85□□□□□ -0.35
CIITA-204ENST00000570546 C5orf52A6NGY3 159 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 NBEAP1P0C6P0 100 aa12.85□□□□□ -0.35
CIITA-204ENST00000570546 C15orf61A6NNL5 157 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 NPIPB11E5RHQ5 1161 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 TAS2R60P59551 318 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 ZNF207O43670 478 aaKnown RBP12.84□□□□□ -0.35
CIITA-204ENST00000570546 CIDEAO60543 219 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 LIPFP07098 398 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 ANOS1P23352 680 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 OR10J6PQ8NGY7 276 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 KCNS1Q96KK3 526 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 SPRR3Q9UBC9 169 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 TCF20Q9UGU0 1960 aaKnown RBP12.84□□□□□ -0.35
CIITA-204ENST00000570546 IL4P05112 153 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 OR9G9P0C7N8 305 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 TCF23Q7RTU1 214 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 DPF1Q92782 380 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 CXCL1P09341 107 aa12.84□□□□□ -0.35
CIITA-204ENST00000570546 B9A039 149 aa12.83□□□□□ -0.35
CIITA-204ENST00000570546 HTN1P15515 57 aa12.83□□□□□ -0.35
CIITA-204ENST00000570546 UCNP55089 124 aa12.83□□□□□ -0.35
CIITA-204ENST00000570546 DNM1P46Q6ZS02 220 aa12.83□□□□□ -0.35
CIITA-204ENST00000570546 CACNG8Q8WXS5 425 aa12.83□□□□□ -0.35
CIITA-204ENST00000570546 KIF26BQ2KJY2 2108 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 LOC105371242A0A075B767 164 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 FOXA3P55318 350 aaPredicted RBP12.83□□□□□ -0.36
CIITA-204ENST00000570546 WNT10AQ9GZT5 417 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 LINC00312Q9Y6C7 94 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 UPK2O00526 184 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 ADMP35318 185 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 MEF2CQ06413 473 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms