RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 IL36RNQ9UBH0 155 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TRMT112Q9UI30 125 aaKnown RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 CES1P1Q9UKY3 287 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 VSIG4Q9Y279 399 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ZNF257Q9Y2Q1 563 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 NLRC5Q86WI3 1866 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ZNF831Q5JPB2 1677 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TNRC6AQ8NDV7 1962 aaKnown RBP2.65□□□□□ -1.98
VPS35-208ENST00000568612 HEATR5AQ86XA9 2040 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 TRBV9A0A0B4J1U6 114 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 ZNF816-ZNF321PA0A0X1KG74 233 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 FRG2CA6NGY1 282 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 SYS1-DBNDD2H3BUS1 97 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 J3QRE1 110 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 NPFFO15130 113 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CRLF1O75462 422 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CXorf1O96002 111 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 KLK1P06870 262 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CD55P08174 381 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CT62P0C5K7 136 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 LINC00694P0DN24 101 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CRISP2P16562 243 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 GPR183P32249 361 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 NBL1P41271 181 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 KIR2DS2P43631 304 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 NMUP48645 174 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CAMPP49913 170 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 RBM11P57052 281 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 KRTAP10-9P60411 292 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 HSPE1P61604 102 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 RPS15AP62244 130 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 RPL31P62899 125 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 RPL38P63173 70 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 FMODQ06828 376 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 PMVKQ15126 192 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 ELOCQ15369 112 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CDO1Q16878 200 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 SPRNQ5BIV9 151 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 OTPQ5XKR4 325 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 DMKNQ6E0U4 476 aaPredicted RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 RASL11AQ6T310 242 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 TMEM64Q6YI46 380 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 Q6ZT83 130 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 APRG1Q8IVJ8 170 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 PRR22Q8IZ63 422 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 NPWQ8N729 165 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 ZNF114Q8NC26 417 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 OR1F12Q8NHA8 337 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 JOSD2Q8TAC2 188 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 SLC37A2Q8TED4 501 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 SSC4DQ8WTU2 575 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 RTN4IP1Q8WWV3 396 aaPredicted RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 RASL10AQ92737 203 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 LSM10Q969L4 123 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 MRPL24Q96A35 216 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 C10orf35Q96D05 121 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 GMPPAQ96IJ6 420 aaPredicted RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 C2orf50Q96LR7 162 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 LINC00477Q96M19 166 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 ZNF488Q96MN9 340 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 VGLL1Q99990 258 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 RASL11BQ9BPW5 248 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 C20orf78Q9BR46 151 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 MS4A6AQ9H2W1 248 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 EDA2RQ9HAV5 297 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 BCL2L10Q9HD36 194 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 BPIFA1Q9NP55 256 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 SCRT2Q9NQ03 307 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 CISHQ9NSE2 258 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 TMEM30AQ9NV96 361 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 ALKBH4Q9NXW9 302 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 TVP23BQ9NYZ1 205 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 PCTPQ9UKL6 214 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 POLR1DQ9Y2S0 133 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 YTHDF2Q9Y5A9 579 aaKnown RBP2.65□□□□□ -1.99
VPS35-208ENST00000568612 INSIG2Q9Y5U4 225 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 THSD7AQ9UPZ6 1657 aa2.65□□□□□ -1.99
VPS35-208ENST00000568612 TRAV24A0A0B4J272 114 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 LOC107984640A0A0U1RRK4 108 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 GRIFINA4D1Z8 144 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 LRRC30A6NM36 301 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TMEM262E9PQX1 116 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TBL1XO60907 577 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 PITX3O75364 302 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ZNF737O75373 536 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 DEDDO75618 318 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ATP5LO75964 103 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 NDUFA7O95182 113 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 APOMO95445 188 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 GYPAP02724 150 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 MT-ND6P03923 174 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 CD3DP04234 171 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 SLC25A5P05141 298 aaKnown RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 SCTP09683 121 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ZNF708P17019 499 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 RPL35AP18077 110 aaKnown RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 GABRG2P18507 467 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 GNLYP22749 145 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 CNTFRP26992 372 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 S100A3P33764 101 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms