RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 JTBO76095 146 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 NDUFB8O95169 186 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 CTSDP07339 412 aaPredicted RBP10.67□□□□□ -0.7
CLN3-235ENST00000568497 ERVK-16P61578 105 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 RHOGP84095 191 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 SSBP1Q04837 148 aaKnown RBP10.67□□□□□ -0.7
CLN3-235ENST00000568497 TRIM16LQ309B1 348 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 SPANXN2Q5MJ10 180 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 TMED4Q7Z7H5 227 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 TOMM5Q8N4H5 51 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 OR5M8Q8NGP6 311 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 SEC22AQ96IW7 307 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 QTRT1Q9BXR0 403 aaKnown RBP10.67□□□□□ -0.7
CLN3-235ENST00000568497 AKIP1Q9NQ31 210 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 COMMD9Q9P000 198 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 GPR132Q9UNW8 380 aa10.67□□□□□ -0.7
CLN3-235ENST00000568497 TEX13DA0A0J9YY54 714 aaPredicted RBP10.66□□□□□ -0.7
CLN3-235ENST00000568497 HLA-AP01891 365 aaKnown RBP10.66□□□□□ -0.7
CLN3-235ENST00000568497 AKR1C4P17516 323 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 MYCNOSP40205 109 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 ECI1P42126 302 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 RND3P61587 244 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 POU2AF1Q16633 256 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 LPCAT3Q6P1A2 487 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 DCUN1D4Q92564 292 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 UBE2E2Q96LR5 201 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 NAA60Q9H7X0 242 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 NDUFA13Q9P0J0 144 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 FLVCR2Q9UPI3 526 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 C14orf166Q9Y224 244 aaKnown RBP10.66□□□□□ -0.7
CLN3-235ENST00000568497 OR51B2Q9Y5P1 312 aa10.66□□□□□ -0.7
CLN3-235ENST00000568497 IGLC7A0M8Q6 106 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 PPP5D1E7EU14 171 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 H0Y980 276 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 SERPINE2P07093 398 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 LGALS1P09382 135 aaKnown RBP10.65□□□□□ -0.7
CLN3-235ENST00000568497 EDN2P20800 178 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 ETV6P41212 452 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 MFAP2P55001 183 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 WT1-ASQ06250 92 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 Q6ZRM9 215 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 VSTM2AQ8TAG5 236 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 ZFAND1Q8TCF1 268 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 CD300LFQ8TDQ1 290 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 DLX4Q92988 240 aaPredicted RBP10.65□□□□□ -0.7
CLN3-235ENST00000568497 FANCD2OSQ96PS1 177 aa10.65□□□□□ -0.7
CLN3-235ENST00000568497 C13orf42A0A1B0GVH6 325 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 MFSD2BA6NFX1 497 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 IGHV3-48P01763 117 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 OR13C7P0DN81 318 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 PSMB6P28072 239 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 S100GP29377 79 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 TRIQKQ629K1 86 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 H2BFWTQ7Z2G1 175 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 SBSPONQ8IVN8 264 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 FAM219AQ8IW50 185 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 SELENOHQ8IZQ5 122 aaKnown RBP10.64□□□□□ -0.71
CLN3-235ENST00000568497 TTC9CQ8N5M4 171 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 TCTEX1D1Q8N7M0 179 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 CCDC71LQ8N9Z2 235 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 BORCS5Q969J3 196 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 SPIN2AQ99865 258 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 PRRT1Q99946 306 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 SPIN2BQ9BPZ2 258 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 COMMD5Q9GZQ3 224 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 ZMAT4Q9H898 229 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 FBXL7Q9UJT9 491 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 SMAD5-AS1Q9Y6J3 95 aa10.64□□□□□ -0.71
CLN3-235ENST00000568497 A0A0B4J293 547 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 CRYM-AS1A6NIL9 109 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 SNAPC5O75971 98 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 LY86O95711 162 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 TRAPPC2P0DI81 140 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 TRAPPC2BP0DI82 140 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 IL7P13232 177 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 CTRB1P17538 263 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 AKR1C2P52895 323 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 SUPT4H1P63272 117 aaKnown RBP10.63□□□□□ -0.71
CLN3-235ENST00000568497 ZNF616Q08AN1 781 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 FHL3Q13643 280 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 EXOSC2Q13868 293 aaKnown RBP10.63□□□□□ -0.71
CLN3-235ENST00000568497 CTRB2Q6GPI1 263 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 OR4A5Q8NH83 315 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 GLYATL2Q8WU03 294 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 GPR146Q96CH1 333 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 CITED4Q96RK1 184 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 SLC2A8Q9NY64 477 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 RABL2AQ9UBK7 228 aaPredicted RBP10.63□□□□□ -0.71
CLN3-235ENST00000568497 RABL2BQ9UNT1 228 aa10.63□□□□□ -0.71
CLN3-235ENST00000568497 PCLOQ9Y6V0 5065 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 IGHV3-35A0A0C4DH35 117 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 C15orf61A6NNL5 157 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 SEC14L6B5MCN3 397 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 LINC01619G3V211 115 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 CREBL2O60519 120 aaPredicted RBP10.62□□□□□ -0.71
CLN3-235ENST00000568497 P0C879 139 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 UCP1P25874 307 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 CD40LGP29965 261 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 BTCP35070 178 aa10.62□□□□□ -0.71
CLN3-235ENST00000568497 MAS1LP35410 378 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms