RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	RNASEH2C	Q8TDP1	164 aa	Known RBP	5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	CACNG8	Q8WXS5	425 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	HIST1H2BH	Q93079	126 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	FLYWCH2	Q96CP2	140 aa	Known RBP	5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	SNRNP40	Q96DI7	357 aa	Known RBP	5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	C1orf159	Q96HA4	380 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	HARBI1	Q96MB7	349 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	UHRF2	Q96PU4	802 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	HIST1H2BN	Q99877	126 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	HIST1H2BM	Q99879	126 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	NABP2	Q9BQ15	211 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	LRFN3	Q9BTN0	628 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	MRPL32	Q9BYC8	188 aa	Known RBP	5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	MRPL20	Q9BYC9	149 aa	Known RBP	5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	OR51M1	Q9H341	326 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	DCAF16	Q9NXF7	216 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	TECR	Q9NZ01	308 aa	Known RBP	5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	FUT9	Q9Y231	359 aa		5.1	□□□□□ -1.59
CLN3-223	ENST00000566472	NCOR1	O75376	2440 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	MDFIC2	A0A1B0GVS7	189 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	SRRM4	A7MD48	611 aa	Known RBP	5.09	□□□□□ -1.59
CLN3-223	ENST00000566472		E7EQL1	145 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	PPP5D1	E7EU14	171 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	RBP4	P02753	201 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	CD3E	P07766	207 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	OR5G3	P0C626	314 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	LINC00869	P0C866	280 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	TRGC1	P0CF51	173 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	IGFBP2	P18065	325 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	LOX	P28300	417 aa	Predicted RBP	5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	ATP5G3	P48201	142 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	CASP6	P55212	293 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	RPL8	P62917	257 aa	Known RBP	5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	PAX2	Q02962	417 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	FOXC1	Q12948	553 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	HLA-DRB5	Q30154	266 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	VMA21	Q3ZAQ7	101 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	GCSAML	Q5JQS6	135 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	COA6	Q5JTJ3	125 aa	Known RBP	5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	CST9LP1	Q5W188	147 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	PQLC2	Q6ZP29	291 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	LINC01551	Q86U37	167 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	OR4C13	Q8NGP0	309 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	OR2T10	Q8NGZ9	312 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	ABHD5	Q8WTS1	349 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	FRZB	Q92765	325 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	ST6GALNAC6	Q969X2	333 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	ACY3	Q96HD9	319 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	WFIKKN1	Q96NZ8	548 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	COMMD5	Q9GZQ3	224 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	PATZ1	Q9HBE1	687 aa	Known RBP	5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	NDUFA4L2	Q9NRX3	87 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	GAR1	Q9NY12	217 aa	Known RBP	5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	CTSZ	Q9UBR2	303 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	PITPNC1	Q9UKF7	332 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	WASHC3	Q9Y3C0	194 aa		5.09	□□□□□ -1.59
CLN3-223	ENST00000566472	USP34	Q70CQ2	3546 aa		5.09	□□□□□ -1.6
CLN3-223	ENST00000566472	IGHV1-69-2	A0A0G2JMI3	117 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	PCP4L1	A6NKN8	68 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	DVL1	O14640	695 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	FCN3	O75636	299 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	NDUFB4	O95168	129 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	IGKV1-16	P04430	117 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	C1QTNF9	P0C862	333 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	CCL3L1	P16619	93 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	LGALS7	P47929	136 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	SUB1	P53999	127 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	UBE2G2	P60604	165 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	CTAG1A	P78358	180 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	FOXL1	Q12952	345 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	ACTL10	Q5JWF8	245 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	PVRIG	Q6DKI7	326 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	SLC16A13	Q7RTY0	426 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	TGIF2LX	Q8IUE1	241 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	HIST3H2BB	Q8N257	126 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	TEX45	Q8NA69	505 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	THAP8	Q8NA92	274 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	OR10X1	Q8NGY0	326 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	OR4X1	Q8NH49	305 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	SSMEM1	Q8WWF3	244 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	TMEM190	Q8WZ59	177 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	H1FX	Q92522	213 aa	Known RBP	5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	CCL17	Q92583	94 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	HINT2	Q9BX68	163 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	NIT2	Q9NQR4	276 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	MSRB2	Q9Y3D2	182 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	ARID1A	O14497	2285 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	PRUNE2	Q8WUY3	3088 aa		5.08	□□□□□ -1.6
CLN3-223	ENST00000566472	LAMA1	P25391	3075 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	SCO2	A0A1W2PP80	73 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472		A0A1W2PRE2	83 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	IFITM10	A6NMD0	228 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	IGLV2-23	P01705	113 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	FABP1	P07148	127 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	C8orf88	P0DMB2	117 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	IGHV1-8	P0DP01	117 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	DEFA4	P12838	97 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	MYOD1	P15172	320 aa		5.07	□□□□□ -1.6
CLN3-223	ENST00000566472	CHRNB4	P30926	498 aa		5.07	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms