RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 DEFA5Q01523 94 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 SURF2Q15527 256 aaPredicted RBP10.29□□□□□ -0.76
CLK3-216ENST00000564468 KLK9Q2XQG4 91 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 C15orf32Q32M92 178 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 H2BFWTQ7Z2G1 175 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 OR4D10Q8NGI6 311 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 OR5B3Q8NH48 314 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 EEF1AKMT3Q96AZ1 226 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 CXorf58Q96LI9 332 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 TMEM56Q96MV1 263 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 PRRT1Q99946 306 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 KLK9Q9UKQ9 250 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 C14orf166Q9Y224 244 aaKnown RBP10.29□□□□□ -0.76
CLK3-216ENST00000564468 OR51B2Q9Y5P1 312 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.28□□□□□ -0.76
CLK3-216ENST00000564468 C3orf85A0A1B0GTC6 90 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 A0A1B0GW64 132 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 IGLC7A0M8Q6 106 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 CGB1A6NKQ9 187 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 CTSDP07339 412 aaPredicted RBP10.28□□□□□ -0.76
CLK3-216ENST00000564468 MYOD1P15172 320 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 KLF5Q13887 457 aaPredicted RBP10.28□□□□□ -0.76
CLK3-216ENST00000564468 OR13C8Q8NGS7 320 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 OR4A16Q8NH70 328 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 MARCH1Q8TCQ1 289 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 LSM10Q969L4 123 aaKnown RBP10.28□□□□□ -0.76
CLK3-216ENST00000564468 SEC22AQ96IW7 307 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 SCGB3A2Q96PL1 93 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 SOSTQ9BQB4 213 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 RBM38Q9H0Z9 239 aaKnown RBP10.28□□□□□ -0.76
CLK3-216ENST00000564468 PEMTQ9UBM1 199 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 SCP2D1Q9UJQ7 156 aa10.28□□□□□ -0.76
CLK3-216ENST00000564468 ZNF256Q9Y2P7 627 aaPredicted RBP10.28□□□□□ -0.76
CLK3-216ENST00000564468 TRBV7-1A0A0A6YYK4 115 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 ANKRD20A5PA0PJZ0 165 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 C15orf61A6NNL5 157 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 RBMXL2O75526 392 aaKnown RBP10.27□□□□□ -0.77
CLK3-216ENST00000564468 REG1AP05451 166 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 PI3P19957 117 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 FAUP35544 74 aaKnown RBP10.27□□□□□ -0.77
CLK3-216ENST00000564468 AP3S2P59780 193 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 OR4C16Q8NGL9 310 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 OR9G4Q8NGQ1 327 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 OR1L6Q8NGR2 347 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 FANCD2OSQ96PS1 177 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 HINT2Q9BX68 163 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 NDUFA4L2Q9NRX3 87 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 TMEM14BQ9NUH8 114 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 NDUFA13Q9P0J0 144 aa10.27□□□□□ -0.77
CLK3-216ENST00000564468 IGLV11-55A0A075B6I3 123 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 GGCTO75223 188 aaKnown RBP10.26□□□□□ -0.77
CLK3-216ENST00000564468 NDUFB8O95169 186 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 LY86O95711 162 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 OR13C7P0DN81 318 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 MECP2P51608 486 aaKnown RBP10.26□□□□□ -0.77
CLK3-216ENST00000564468 AKR1C2P52895 323 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 SYNJ2BPP57105 145 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 TRIM16LQ309B1 348 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 PYDC2Q56P42 97 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 GDPD1Q8N9F7 314 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 OR10W1Q8NGF6 305 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 MRGPRFQ96AM1 343 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 THAP7Q9BT49 309 aaPredicted RBP10.26□□□□□ -0.77
CLK3-216ENST00000564468 SLC2A8Q9NY64 477 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 NSG2Q9Y328 171 aa10.26□□□□□ -0.77
CLK3-216ENST00000564468 TEX13DA0A0J9YY54 714 aaPredicted RBP10.25□□□□□ -0.77
CLK3-216ENST00000564468 BMPR1BO00238 502 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 IGKV1-39P01597 117 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 TRBV12-3P01733 135 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 IGKV1D-39P04432 117 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 UCP1P25874 307 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 SPANXN2Q5MJ10 180 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 SLC25A24Q6NUK1 477 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 FAAP20Q6NZ36 180 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 OR51S1Q8NGJ8 323 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 DEDD2Q8WXF8 326 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 RRNAD1Q96FB5 475 aaKnown RBP10.25□□□□□ -0.77
CLK3-216ENST00000564468 TP53RKQ96S44 253 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 MCUBQ9NWR8 336 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 SIGLEC8Q9NYZ4 499 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 GPR132Q9UNW8 380 aa10.25□□□□□ -0.77
CLK3-216ENST00000564468 ARL3P36405 182 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 HSPE1P61604 102 aaKnown RBP10.24□□□□□ -0.77
CLK3-216ENST00000564468 ERHP84090 104 aaKnown RBP10.24□□□□□ -0.77
CLK3-216ENST00000564468 DHODHQ02127 395 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 WT1-ASQ06250 92 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 CLEC19AQ6UXS0 136 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 C19orf35Q6ZS72 473 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 Q8N402 240 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 TOMM5Q8N4H5 51 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 RNASE11Q8TAA1 199 aaKnown RBP10.24□□□□□ -0.77
CLK3-216ENST00000564468 VN1R17PQ8TDU5 208 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 PRR25Q96S07 402 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 PDCD10Q9BUL8 212 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 KCNIP3Q9Y2W7 256 aa10.24□□□□□ -0.77
CLK3-216ENST00000564468 F11RQ9Y624 299 aaKnown RBP10.24□□□□□ -0.77
CLK3-216ENST00000564468 IGLV1-51P01701 117 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 SPNP16150 400 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 PRCDQ00LT1 54 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 SP6Q3SY56 376 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms