RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 GABARAPL2P60520 117 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 TNFRSF9Q07011 255 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 CATR1Q13166 79 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 AADACL3Q5VUY0 350 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 SLC25A24Q6NUK1 477 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 CEMP1Q6PRD7 247 aaPredicted RBP12.51□□□□□ -0.41
CLN3-211ENST00000564091 Q6ZWC4 215 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 WFDC3Q8IUB2 231 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 DMBX1Q8NFW5 382 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 SRSF8Q9BRL6 282 aaKnown RBP12.51□□□□□ -0.41
CLN3-211ENST00000564091 QTRT1Q9BXR0 403 aaKnown RBP12.51□□□□□ -0.41
CLN3-211ENST00000564091 TP53TG1Q9Y2A0 90 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 IGHV3OR16-8A0A075B7F1 116 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 NUPR2A6NF83 97 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 TSPAN4O14817 238 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 MRPS14O60783 128 aaKnown RBP12.5□□□□□ -0.41
CLN3-211ENST00000564091 RPL35AP18077 110 aaKnown RBP12.5□□□□□ -0.41
CLN3-211ENST00000564091 WT1-ASQ06250 92 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 ODF3L2Q3SX64 289 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 IDNKQ5T6J7 187 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 TMEM17Q86X19 198 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 GDPD1Q8N9F7 314 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 VN1R17PQ8TDU5 208 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 C20orf24Q9BUV8 137 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 AUNIPQ9H7T9 357 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 PLEKHA2Q9HB19 425 aa12.5□□□□□ -0.41
CLN3-211ENST00000564091 TEX50A0A1B0GTY4 177 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 MEIS3P1A6NDR6 274 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 ZNF207O43670 478 aaKnown RBP12.49□□□□□ -0.41
CLN3-211ENST00000564091 TRAPPC2P0DI81 140 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 TRAPPC2BP0DI82 140 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 MFAP2P55001 183 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 CD300LFQ8TDQ1 290 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 GIMAP1Q8WWP7 306 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 CHRDL1Q9BU40 450 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 HINT2Q9BX68 163 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 DAZ1Q9NQZ3 744 aaKnown RBP12.49□□□□□ -0.41
CLN3-211ENST00000564091 RAB26Q9ULW5 256 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 ETV7Q9Y603 341 aa12.49□□□□□ -0.41
CLN3-211ENST00000564091 UBE2CO00762 179 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 SERPINE2P07093 398 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 GNRHRP30968 328 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 LAMTOR1Q6IAA8 161 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 STPG3Q8N7X2 389 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 UBAC2Q8NBM4 344 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 OR5AP2Q8NGF4 316 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 SCARB1Q8WTV0 552 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 RNF183Q96D59 192 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 NSG2Q9Y328 171 aa12.48□□□□□ -0.41
CLN3-211ENST00000564091 VPS13DQ5THJ4 4388 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 LOC100506127A0A0U1RQW1 187 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 F8W735 103 aaPredicted RBP12.47□□□□□ -0.41
CLN3-211ENST00000564091 CYB5BO43169 146 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 ADMP35318 185 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 RPP25LQ8N5L8 163 aaKnown RBP12.47□□□□□ -0.41
CLN3-211ENST00000564091 OR1L8Q8NGR8 309 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 OR5B3Q8NH48 314 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 FCGR1BQ92637 280 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 BSCL2Q96G97 398 aaPredicted RBP12.47□□□□□ -0.41
CLN3-211ENST00000564091 NDUFA4L2Q9NRX3 87 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 C21orf62Q9NYP8 219 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 COMMD9Q9P000 198 aa12.47□□□□□ -0.41
CLN3-211ENST00000564091 F11RQ9Y624 299 aaKnown RBP12.47□□□□□ -0.41
CLN3-211ENST00000564091 A0A0A6YYH2 397 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 KIR2DL5BA0A0G2JN68 375 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 KIR2DL5BA0A0G2JPC4 375 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 A6NJ64 397 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 MARCH11A6NNE9 402 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 NDUFA4O00483 81 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 PGLYRP1O75594 196 aaPredicted RBP12.46□□□□□ -0.41
CLN3-211ENST00000564091 CTSDP07339 412 aaPredicted RBP12.46□□□□□ -0.41
CLN3-211ENST00000564091 FGF2P09038 288 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 SCAND1P57086 179 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 HERV-K104P61576 105 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 ERVK-16P61578 105 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 THOC7Q6I9Y2 204 aaKnown RBP12.46□□□□□ -0.41
CLN3-211ENST00000564091 KIR2DL5AQ8N109 375 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 KIR2DL5BQ8NHK3 375 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 MAP6D1Q9H9H5 199 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 DIABLOQ9NR28 239 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 KLK5Q9Y337 293 aaPredicted RBP12.46□□□□□ -0.41
CLN3-211ENST00000564091 OR51B2Q9Y5P1 312 aa12.46□□□□□ -0.41
CLN3-211ENST00000564091 OR4C46A6NHA9 309 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 K7EIM0 57 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 KRASP01116 189 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 RLN1P04808 185 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 F2RP25116 425 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 FCGR2BP31994 310 aaPredicted RBP12.45□□□□□ -0.42
CLN3-211ENST00000564091 LPAR6P43657 344 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 RFX2P48378 723 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 ZNF124Q15973 351 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 Q56UQ5 140 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 SPSB3Q6PJ21 355 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 HSD17B13Q7Z5P4 300 aaPredicted RBP12.45□□□□□ -0.42
CLN3-211ENST00000564091 APRG1Q8IVJ8 170 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 FCAMRQ8WWV6 532 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 LSM10Q969L4 123 aaKnown RBP12.45□□□□□ -0.42
CLN3-211ENST00000564091 EHFQ9NZC4 300 aa12.45□□□□□ -0.42
CLN3-211ENST00000564091 K7EMT4 169 aa12.44□□□□□ -0.42
CLN3-211ENST00000564091 G6PCP35575 357 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms