RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TGFBR1P36897 503 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 RFX2P48378 723 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 TMEM69Q5SWH9 247 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 UNQ9165/PRO28630Q6UXU0 137 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 SAMD12Q8N8I0 201 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 GDPD1Q8N9F7 314 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 IL17DQ8TAD2 202 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 ZNF2Q9BSG1 426 aaPredicted RBP12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 ZNF436Q9C0F3 470 aaPredicted RBP12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 SRD5A3Q9H8P0 318 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 NDUFA4L2Q9NRX3 87 aa12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 MRPL27Q9P0M9 148 aaKnown RBP12.91□□□□□ -0.34
VPS9D1-203ENST00000563798 DNAH1Q9P2D7 4330 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 CYB5BO43169 146 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 SERPINE2P07093 398 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 ERVK-16P61578 105 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 WT1-ASQ06250 92 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 ANKRD55Q3KP44 614 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 TM4SF20Q53R12 229 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 LYSMD2Q8IV50 215 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 OR10W1Q8NGF6 305 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 OR1L8Q8NGR8 309 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 DGCR14Q96DF8 476 aaKnown RBP12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 CMTM3Q96MX0 182 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 WFDC10AQ9H1F0 79 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 RETNQ9HD89 108 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 FAM212BQ9NTI7 297 aaPredicted RBP12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 UFC1Q9Y3C8 167 aa12.9□□□□□ -0.34
VPS9D1-203ENST00000563798 LYSTQ99698 3801 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 A0A087WXM4 84 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 PMP2P02689 132 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 RLN1P04808 185 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 GPR183P32249 361 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 PRSS3P35030 304 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 ZNF585BQ52M93 769 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 PLET1Q6UQ28 207 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 CMTM1Q8IZ96 169 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 OR5H2Q8NGV7 314 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 OR6F1Q8NGZ6 308 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 FCAMRQ8WWV6 532 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 SLC25A46Q96AG3 418 aa12.89□□□□□ -0.35
VPS9D1-203ENST00000563798 GPR31O00270 319 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 TGOLN2O43493 480 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 OR13C7P0DN81 318 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 LPAR6P43657 344 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 BTNL8Q6UX41 500 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 TSPAN14Q8NG11 270 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 OR52B4Q8NGK2 314 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 GPX8Q8TED1 209 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 LSM10Q969L4 123 aaKnown RBP12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 FXYD6Q9H0Q3 95 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 C5orf66Q9H5L9 145 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 VCX3AQ9NNX9 186 aa12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 GAR1Q9NY12 217 aaKnown RBP12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 F11RQ9Y624 299 aaKnown RBP12.88□□□□□ -0.35
VPS9D1-203ENST00000563798 MFAP2P55001 183 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 LPCAT3Q6P1A2 487 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 SPSB3Q6PJ21 355 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 OR1L6Q8NGR2 347 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 OR5B3Q8NH48 314 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 TMEM190Q8WZ59 177 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 BSCL2Q96G97 398 aaPredicted RBP12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 FAM110AQ9BQ89 295 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 SCPEP1Q9HB40 452 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 PRNDQ9UKY0 176 aa12.87□□□□□ -0.35
VPS9D1-203ENST00000563798 TNFAIP8O95379 198 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 KRASP01116 189 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 APOA1P02647 267 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 RPA2P15927 270 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 HRH1P35367 487 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 LSM3P62310 102 aaKnown RBP12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 TSC22D3Q99576 134 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 SPAG8Q99932 426 aaPredicted RBP12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 GGTLC1Q9BX51 225 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 TMEM14BQ9NUH8 114 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 FKBP11Q9NYL4 201 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 OR51B2Q9Y5P1 312 aa12.86□□□□□ -0.35
VPS9D1-203ENST00000563798 F8W735 103 aaPredicted RBP12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 K7EMT4 169 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 NDUFA4O00483 81 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 SNAPC5O75971 98 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 SCAF4O95104 1147 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 EIF4EP06730 217 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 G6PCP35575 357 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 SLC25A24Q6NUK1 477 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 RBPMS2Q6ZRY4 209 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 SCARB1Q8WTV0 552 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 DAZ1Q9NQZ3 744 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 C21orf62Q9NYP8 219 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 SELENOKQ9Y6D0 94 aa12.85□□□□□ -0.35
VPS9D1-203ENST00000563798 LOC102724200A0A096LPH7 203 aaPredicted RBP12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 OR2T8A6NH00 312 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 K7EIM0 57 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 TSPAN4O14817 238 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 HLA-DMAP28067 261 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 UCP3P55916 312 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 OR2C3Q8N628 320 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 TMEM56Q96MV1 263 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 NSG2Q9Y328 171 aa12.84□□□□□ -0.35
VPS9D1-203ENST00000563798 IGHV3-35A0A0C4DH35 117 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms