RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TMEM217Q8N7C4 229 aa12.11□□□□□ -0.47
CLN3-208ENST00000561505 BEST4Q8NFU0 473 aa12.11□□□□□ -0.47
CLN3-208ENST00000561505 OR10W1Q8NGF6 305 aa12.11□□□□□ -0.47
CLN3-208ENST00000561505 OR13F1Q8NGS4 319 aa12.11□□□□□ -0.47
CLN3-208ENST00000561505 GIMAP1Q8WWP7 306 aa12.11□□□□□ -0.47
CLN3-208ENST00000561505 QTRT1Q9BXR0 403 aaKnown RBP12.11□□□□□ -0.47
CLN3-208ENST00000561505 COMMD5Q9GZQ3 224 aa12.11□□□□□ -0.47
CLN3-208ENST00000561505 TXNL4BQ9NX01 149 aaKnown RBP12.11□□□□□ -0.47
CLN3-208ENST00000561505 IGHV3-35A0A0C4DH35 117 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 TEX50A0A1B0GTY4 177 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 MFAP2P55001 183 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 CD300LFQ8TDQ1 290 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 PHLDA1Q8WV24 401 aaPredicted RBP12.1□□□□□ -0.47
CLN3-208ENST00000561505 SECTM1Q8WVN6 248 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 CHRDL1Q9BU40 450 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 HRASLSQ9HDD0 168 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 NDUFA4L2Q9NRX3 87 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 UBQLN2Q9UHD9 624 aa12.1□□□□□ -0.47
CLN3-208ENST00000561505 A0A0A6YYH2 397 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 OR4C46A6NHA9 309 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 A6NJ64 397 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 C15orf62A8K5M9 175 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 SULT1C2O00338 296 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 TNFSF12O43508 249 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 TRAPPC2P0DI81 140 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 TRAPPC2BP0DI82 140 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 CATR1Q13166 79 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 GVQW1Q8N7I0 195 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 GATAD1Q8WUU5 269 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 TMEM140Q9NV12 185 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 RHBDL2Q9NX52 303 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 COMMD9Q9P000 198 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 BLOC1S6Q9UL45 172 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 ETV7Q9Y603 341 aa12.09□□□□□ -0.47
CLN3-208ENST00000561505 F11RQ9Y624 299 aaKnown RBP12.09□□□□□ -0.47
CLN3-208ENST00000561505 DNAH6Q9C0G6 4158 aa12.08□□□□□ -0.47
CLN3-208ENST00000561505 K7EIM0 57 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 CYB5BO43169 146 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 CTSGP08311 255 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 PTHLHP12272 177 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 FCGR2BP31994 310 aaPredicted RBP12.08□□□□□ -0.48
CLN3-208ENST00000561505 SFXN4Q6P4A7 337 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 ZNF818PQ6ZRF7 136 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 LGALS14Q8TCE9 139 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 SCARB1Q8WTV0 552 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 SLC25A38Q96DW6 304 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 SLC5A7Q9GZV3 580 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 C11orf68Q9H3H3 251 aaKnown RBP12.08□□□□□ -0.48
CLN3-208ENST00000561505 SMPXQ9UHP9 88 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 DAPK2Q9UIK4 370 aa12.08□□□□□ -0.48
CLN3-208ENST00000561505 SMIM30A4D0T7 59 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 OR2T8A6NH00 312 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 CTSDP07339 412 aaPredicted RBP12.07□□□□□ -0.48
CLN3-208ENST00000561505 OR13C7P0DN81 318 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 GNRHRP30968 328 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 CMC4P56277 68 aaPredicted RBP12.07□□□□□ -0.48
CLN3-208ENST00000561505 GABARAPL2P60520 117 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 FAM90A2PQ658T7 463 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 OR1L8Q8NGR8 309 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 OR10C1Q96KK4 312 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 C21orf62Q9NYP8 219 aa12.07□□□□□ -0.48
CLN3-208ENST00000561505 DEDDO75618 318 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 RPA2P15927 270 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 ARPC4P59998 168 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 SLC25A24Q6NUK1 477 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 DHRS11Q6UWP2 260 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 OR5AP2Q8NGF4 316 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 CSTL1Q9H114 145 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 AUNIPQ9H7T9 357 aa12.06□□□□□ -0.48
CLN3-208ENST00000561505 RRP15Q9Y3B9 282 aaKnown RBP12.06□□□□□ -0.48
CLN3-208ENST00000561505 TRAV18A0A075B6X5 111 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 MARCH11A6NNE9 402 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 F2RP25116 425 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 HSPA13P48723 471 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 TCTAP57738 103 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 OR5H6Q8NGV6 325 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 BORCS5Q969J3 196 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 LSM10Q969L4 123 aaKnown RBP12.05□□□□□ -0.48
CLN3-208ENST00000561505 ANAPC10Q9UM13 185 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 KIAA1109Q2LD37 5005 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 PCLOQ9Y6V0 5065 aa12.05□□□□□ -0.48
CLN3-208ENST00000561505 IGHV7-4-1A0A0J9YVY3 117 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 CHEK1O14757 476 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 RPL35AP18077 110 aaKnown RBP12.04□□□□□ -0.48
CLN3-208ENST00000561505 CBX5P45973 191 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 SPARTQ8N0X7 666 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 DMBX1Q8NFW5 382 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 RNF2Q99496 336 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 MFFQ9GZY8 342 aa12.04□□□□□ -0.48
CLN3-208ENST00000561505 MPTX1A8MV57 137 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 ANKRD65E5RJM6 399 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 TMEM127O75204 238 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 PGLYRP1O75594 196 aaPredicted RBP12.03□□□□□ -0.48
CLN3-208ENST00000561505 SDC2P34741 201 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 APRG1Q8IVJ8 170 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 OR1P1Q8NH06 330 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 OR5B3Q8NH48 314 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 OR51H1Q8NH63 302 aa12.03□□□□□ -0.48
CLN3-208ENST00000561505 DGCR14Q96DF8 476 aaKnown RBP12.03□□□□□ -0.48
CLN3-208ENST00000561505 TXN2Q99757 166 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms