RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TMEM14CQ9P0S9 112 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 RABL2AQ9UBK7 228 aaPredicted RBP-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 FUT9Q9Y231 359 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 TMEM94Q12767 1356 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 ANAPC1Q9H1A4 1944 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 EML6Q6ZMW3 1958 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 CHD5Q8TDI0 1954 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 SMARCA4P51532 1647 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 FABP5P3A8MUU1 101 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 INE1O15225 51 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 ACOX3O15254 700 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 SULT1B1O43704 296 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 UBL3O95164 117 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 CD3DP04234 171 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 HTR1AP08908 422 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 ZNF137PP52743 207 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 POLR2GP62487 172 aaKnown RBP eCLIP-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 STX3Q13277 289 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 SPRNQ5BIV9 151 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 FAM74A1Q5RGS3 127 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 RBM48Q5RL73 367 aaKnown RBP-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 ZNF550Q7Z398 422 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 UBL4BQ8N7F7 174 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 RBP7Q96R05 134 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 FAM96AQ9H5X1 160 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 HES4Q9HCC6 221 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 FKBP14Q9NWM8 211 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 CKLFQ9UBR5 152 aa-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 PTPRZ1P23471 2315 aaPredicted RBP-0.26□□□□□ -2.45
VPS13C-205ENST00000558088 ABCA4P78363 2273 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 MAP3K19Q56UN5 1328 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 C1orf232A0A0U1RR37 186 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 PQLC2LA1A4F0 135 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 GOLGA8MH3BSY2 632 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 NDUFS8O00217 210 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 APOMO95445 188 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 IGLV3-1P01715 115 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 IL6P05231 212 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 SLC35E2BP0CK96 405 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 KCNE1P15382 129 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 MIPP30301 263 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 SSR2P43308 183 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 CARD18P57730 90 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 FABP9Q0Z7S8 132 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 KISS1Q15726 138 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 C4orf26Q17RF5 130 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 HLA-DRB5Q30154 266 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 TNFAIP8L3Q5GJ75 292 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 SPANXN5Q5MJ07 72 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 SBSNQ6UWP8 590 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 SOSTDC1Q6X4U4 206 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 Q6ZQT0 140 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 RIBC1Q8N443 379 aaPredicted RBP-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 OR52E4Q8NGH9 312 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 DNAJC9Q8WXX5 260 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 IL36BQ9NZH7 164 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 RSL24D1Q9UHA3 163 aaKnown RBP-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 COQ4Q9Y3A0 265 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 HEATR5AQ86XA9 2040 aa-0.27□□□□□ -2.45
VPS13C-205ENST00000558088 REREQ9P2R6 1566 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 MTUS2Q5JR59 1369 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 DENND4CQ5VZ89 1909 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 NUPR2A6NF83 97 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 SMIM9A6NGZ8 99 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 KCNK1O00180 336 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 SYNGR1O43759 233 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 HMMRO75330 724 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 GP1BAP07359 652 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 CCDC172P0C7W6 258 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 RD3LP0DJH9 198 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 CCL2P13500 99 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 HOXA6P31267 233 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 SPINT3P49223 89 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 RHOGP84095 191 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 STX5Q13190 355 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 PDE6HQ13956 83 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 EBPQ15125 230 aaKnown RBP-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 ZNHIT3Q15649 155 aaPredicted RBP-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 KHDC3LQ587J8 217 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 FAM45BPQ6NSW5 357 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 ZNF826PQ6ZT77 177 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 SLC51BQ86UW2 128 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 CLVS1Q8IUQ0 354 aaPredicted RBP-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 MCFD2Q8NI22 146 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 RORBQ92753 470 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 FAM103A1Q9BTL3 118 aaKnown RBP-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 AK3Q9UIJ7 227 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 ANAPC10Q9UM13 185 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 PXMP4Q9Y6I8 212 aa-0.28□□□□□ -2.45
VPS13C-205ENST00000558088 NSD1Q96L73 2696 aaPredicted RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 HRNRQ86YZ3 2850 aaPredicted RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 TRAV3A0A0B4J244 114 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 TEX50A0A1B0GTY4 177 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 TLCD2A6NGC4 264 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 ZNF736B4DX44 427 aaPredicted RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 GOLGA6L19H0YKK7 550 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 CCRL2O00421 344 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 FAAHO00519 579 aa-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 FADS2O95864 444 aaKnown RBP-0.29□□□□□ -2.46
VPS13C-205ENST00000558088 PRM2P04554 102 aa-0.29□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms