RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	SPATA31B1P	Q5VZV4	182 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR4A47	Q6IF82	309 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	C1orf210	Q8IVY1	113 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	VKORC1L1	Q8N0U8	176 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR8I2	Q8N0Y5	310 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	VN1R17P	Q8TDU5	208 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	KCNS1	Q96KK3	526 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	MSL2	Q9HCI7	577 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	CALY	Q9NYX4	217 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	NAT8B	Q9UHF3	227 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	DUSP13	Q9UII6	198 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433		A0A1W2PRE2	83 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	C19orf67	A6NJJ6	358 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	CGA	P01215	116 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	TFF1	P04155	84 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	AMY1A	P04745	511 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	IRF2	P14316	349 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	COMP	P49747	757 aa	Predicted RBP	13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	TMEM136	Q6ZRR5	245 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	GNB4	Q9HAV0	340 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	PAM16	Q9Y3D7	125 aa		13.39	□□□□□ -0.27
SHMT2-231	ENST00000557433	FOXH1	O75593	365 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	CGB3	P0DN86	165 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	CGB7	P0DN87	165 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	FABP6	P51161	128 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	CASP6	P55212	293 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	PSG5	Q15238	335 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	COL5A1-AS1	Q5SY13	56 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	ST6GALNAC3	Q8NDV1	305 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	NABP2	Q9BQ15	211 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	COMMD5	Q9GZQ3	224 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	FAM234A	Q9H0X4	552 aa		13.38	□□□□□ -0.27
SHMT2-231	ENST00000557433	IGHV2OR16-5	A0A0B4J2B6	119 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433		A0A1W2PNU3	283 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	ZNF253	O75346	499 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	IGFBP2	P18065	325 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	CDKN1A	P38936	164 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	ZNF134	P52741	427 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	C19orf35	Q6ZS72	473 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	MIR17HG	Q75NE6	70 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	MRPL32	Q9BYC8	188 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	PLEKHA3	Q9HB20	300 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	IDI2-AS1	Q9NZ38	188 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	IL17B	Q9UHF5	180 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	DIDO1	Q9BTC0	2240 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	SMIM27	A0A1W2PRY6	76 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	DIRC3	C9JPN6	131 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	SUMO1	P63165	101 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	PRCD	Q00LT1	54 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	TRIB1	Q96RU8	372 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	FBXL7	Q9UJT9	491 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR51B2	Q9Y5P1	312 aa		13.37	□□□□□ -0.27
SHMT2-231	ENST00000557433	AGFG2	O95081	481 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	CRYBB3	P26998	211 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	PPOX	P50336	477 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	REL	Q04864	619 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	C2orf83	Q53S99	150 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	WIPF2	Q8TF74	440 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	LPAR2	Q9HBW0	351 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	MRPL27	Q9P0M9	148 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	UQCR10	Q9UDW1	63 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	TBL2	Q9Y4P3	447 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	DOCK7	Q96N67	2140 aa		13.36	□□□□□ -0.27
SHMT2-231	ENST00000557433	HCFC1	P51610	2035 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	CTRL	P40313	264 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	KIR2DL2	P43627	348 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	AMT	P48728	403 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	TDRG1	Q3Y452	100 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	KLHDC1	Q8N7A1	406 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433		Q8N976	141 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	CNEP1R1	Q8N9A8	125 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR2Z1	Q8NG97	314 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	NRN1	Q9NPD7	142 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	KBTBD11-OT1	A0A1B0GTJ5	212 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	LNP1	A1A4G5	178 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	IZUMO1R	A6ND01	250 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	ZNF324	O75467	553 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	CD33	P20138	364 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	KRTDAP	P60985	99 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	MRPS11	P82912	194 aa	Known RBP	13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	HOXA4	Q00056	320 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR5I1	Q13606	314 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR1L8	Q8NGR8	309 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433	PLSCR4	Q9NRQ2	329 aa		13.35	□□□□□ -0.27
SHMT2-231	ENST00000557433		A0A1W2PS18	150 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	PRR33	A8MZF0	331 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433		J3QR06	171 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	UPK2	O00526	184 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	SAA2	P0DJI9	122 aa	Predicted RBP	13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	C8orf88	P0DMB2	117 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	PRRX1	P54821	245 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	C17orf58	Q2M2W7	97 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	CT45A1	Q5HYN5	189 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	IBA57	Q5T440	356 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	OR5B3	Q8NH48	314 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	CT45A3	Q8NHU0	189 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	IGF2BP2-AS1	Q96M15	143 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	CHRDL1	Q9BU40	450 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	SPEG	Q15772	3267 aa		13.34	□□□□□ -0.27
SHMT2-231	ENST00000557433	CACNA1D	Q01668	2161 aa		13.33	□□□□□ -0.28

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